BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	682222 =	107 (1.090)	13 (0.150)	7/140	NT	12.7%	intergenic (‑64/+45)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF
*	?	USA300TCH1516_ALE	682264 =	85 (0.990)	13 (0.150)	7/140	NT	12.7%	intergenic (‑106/+3)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 149 total aligned reads displayed.

TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTT  >  USA300TCH1516_ALE/682132‑682311

ttCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtca                                                                                           <  1:1127345/91‑1 (MQ=255)

 aatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt                                                                                          >  1:2263161‑M1/90‑91 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                         <  1:91619/91‑1 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                         >  1:2475140/1‑91 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                         <  1:1939819/91‑1 (MQ=255)

  atatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATc                                                                                         >  1:2789826‑M1/89‑91 (MQ=255)

    ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCaa                                                                                       >  1:3363959/1‑91 (MQ=255)

    ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGATCATCaa                                                                                       >  1:2078264/1‑91 (MQ=255)

    atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa                                                                                       <  1:3408665‑M1/5‑1 (MQ=255)

    atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa                                                                                       <  1:1598207‑M1/5‑1 (MQ=255)

    atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa                                                                                       <  1:1642083‑M1/5‑1 (MQ=255)

     tgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAAc                                                                                      <  1:3662579‑M1/6‑1 (MQ=255)

     tgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAAc                                                                                      <  1:2192397‑M1/6‑1 (MQ=255)

      gaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACt                                                                                     <  1:3163621‑M1/7‑1 (MQ=255)

       aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc                                                                                    >  1:262244‑M1/84‑91 (MQ=255)

        gTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTcc                                                                                   <  1:4113473/91‑1 (MQ=255)

        gTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTcc                                                                                   >  1:1719354/1‑91 (MQ=255)

         tttttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTccc                                                                                  >  1:3467432/1‑91 (MQ=255)

         gaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTccc                                                                                  <  1:2511392‑M1/10‑1 (MQ=255)

         gaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTccc                                                                                  >  1:2065574‑M1/82‑91 (MQ=255)

            ttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGCTATATGTTCATCAACTCCCGAt                                                                               >  1:2623337/1‑91 (MQ=255)

            ttttcttttgttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAt                                                                               <  1:3724818/91‑1 (MQ=255)

              ttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAc                                                                             <  1:15045/91‑1 (MQ=255)

                ctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCa                                                                           <  1:2661669/91‑1 (MQ=255)

                 tttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCAt                                                                          >  1:280804/1‑91 (MQ=255)

                 tttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCAt                                                                          <  1:1212551/91‑1 (MQ=255)

                 tttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCAt                                                                          >  1:3570390/1‑91 (MQ=255)

                 tttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCACGATACCAt                                                                          >  1:3979070/1‑91 (MQ=255)

                  ttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATc                                                                         >  1:2654582/1‑91 (MQ=255)

                  ttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATc                                                                         >  1:2649496/1‑91 (MQ=255)

                  ttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATc                                                                         >  1:2470109/1‑91 (MQ=255)

                     tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCt                                                                      <  1:126039/91‑1 (MQ=255)

                     tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCt                                                                      <  1:2181509/91‑1 (MQ=255)

                      ttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTa                                                                     <  1:3661387/91‑1 (MQ=255)

                      ttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTa                                                                     >  1:2565200/1‑91 (MQ=255)

                        gatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTaaa                                                                   >  1:1814028‑M1/67‑91 (MQ=255)

                        gatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTaaa                                                                   >  1:785223‑M1/67‑91 (MQ=255)

                         aTGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAg                                                                  <  1:3188799/91‑1 (MQ=255)

                          tGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc                                                                 >  1:899172/1‑91 (MQ=255)

                          tGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc                                                                 >  1:520082/1‑91 (MQ=255)

                              tatCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGtat                                                             >  1:2259889/1‑91 (MQ=255)

                               aaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGtata                                                            >  1:700532‑M1/60‑91 (MQ=255)

                                aaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAg                                                           >  1:3729757‑M1/59‑91 (MQ=255)

                                 cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGTGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg                                                          <  1:3291030/91‑1 (MQ=255)

                                   tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGa                                                        >  1:2515081/1‑91 (MQ=255)

                                   tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGa                                                        >  1:2515095/1‑91 (MQ=255)

                                   gtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGa                                                        >  1:220591‑M1/56‑91 (MQ=255)

                                    tttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                       >  1:3767648‑M1/55‑91 (MQ=255)

                                    tttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                       >  1:3767721‑M1/55‑91 (MQ=255)

                                    cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                       >  1:237018/1‑91 (MQ=255)

                                      tttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGtt                                                     >  1:759680/1‑91 (MQ=255)

                                      tttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGtt                                                     >  1:2725835/1‑91 (MQ=255)

                                        tACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCGTCGCTAAAGCGTATAGGGAGTTGa                                                   >  1:522088/1‑91 (MQ=255)

                                        tACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGa                                                   >  1:519391/1‑91 (MQ=255)

                                         aCTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAt                                                  >  1:1363405/1‑91 (MQ=255)

                                          cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                 <  1:3882112/91‑1 (MQ=255)

                                          cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt                                                 >  1:1354298/1‑91 (MQ=255)

                                           ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                <  1:1009146/91‑1 (MQ=255)

                                           ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                <  1:179353/91‑1 (MQ=255)

                                             ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                              <  1:2097934/91‑1 (MQ=255)

                                              tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                             >  1:3880517/1‑91 (MQ=255)

                                              tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                             <  1:323702/91‑1 (MQ=255)

                                                 aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt                                          <  1:1980420/91‑1 (MQ=255)

                                                    ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                       >  1:656762/1‑91 (MQ=255)

                                                     gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                      <  1:431629/91‑1 (MQ=255)

                                                     gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                      <  1:418764/91‑1 (MQ=255)

                                                     gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                      >  1:1047093/1‑91 (MQ=255)

                                                      ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                     >  1:1728749/1‑91 (MQ=255)

                                                       tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCa                                    >  1:3774529/1‑91 (MQ=255)

                                                       tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCa                                    >  1:3774385/1‑91 (MQ=255)

                                                        atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                   >  1:4674/1‑91 (MQ=255)

                                                         tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata                                  >  1:3119906/1‑91 (MQ=255)

                                                          ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                 <  1:1977576/91‑1 (MQ=255)

                                                          ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                 <  1:3027689/91‑1 (MQ=255)

                                                           tataAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtatt                                >  1:1185289/1‑91 (MQ=255)

                                                            ataAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGGATAGGGAGTTGATTATTTATTTTTTCAtatta                               >  1:3549699/1‑91 (MQ=255)

                                                              aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                             <  1:1832771/91‑1 (MQ=255)

                                                              aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                             >  1:2940987/1‑91 (MQ=255)

                                                               aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt                            <  1:1022241/91‑1 (MQ=255)

                                                                 aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGACTTGATTCTTTATTTTTTCATATTATTttc                          >  1:3331458/1‑91 (MQ=255)

                                                                  tAAGTTATAAGAGGATATATGTTCATCAAATGCCGATACCATCGATAAAGCGTTTAGGGAGTTGATTCTTTATTTTTTCATATTATTttct                         <  1:3318249/91‑1 (MQ=255)

                                                                     gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                      >  1:4132500/1‑91 (MQ=255)

                                                                     gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                      >  1:2171197/1‑91 (MQ=255)

                                                                        ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                   <  1:619674/91‑1 (MQ=255)

                                                                         taAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATcaa                  >  1:418131/1‑91 (MQ=255)

                                                                              ggATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGt             <  1:1634344/91‑1 (MQ=255)

                                                                                atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt           <  1:1913266/91‑1 (MQ=255)

                                                                                atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt           <  1:1297310/91‑1 (MQ=255)

                                                                                 tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta          <  1:1091209/91‑1 (MQ=255)

                                                                                 tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta          <  1:1094477/91‑1 (MQ=255)

                                                                                  atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat         <  1:283052/91‑1 (MQ=255)

                                                                                  atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat         <  1:2016371/91‑1 (MQ=255)

                                                                                  atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat         <  1:2016065/91‑1 (MQ=255)

                                                                                    atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta       <  1:68488/91‑1 (MQ=255)

                                                                                    atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta       <  1:2582805/91‑1 (MQ=255)

                                                                                     tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat      >  1:3478325/1‑91 (MQ=255)

                                                                                      gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc     <  1:524810/91‑1 (MQ=255)

                                                                                      gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc     <  1:2120257/91‑1 (MQ=255)

                                                                                      gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc     >  1:2955337/1‑91 (MQ=255)

                                                                                         catcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCttt  >  1:393104/1‑91 (MQ=255)

TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTT  >  USA300TCH1516_ALE/682132‑682311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.