| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 691792 | 107 (1.090) | 8 (0.100) | 5/132 | NT | 7.4% | coding (30/1056 nt) | USA300HOU_RS03335 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 691823 | 113 (1.390) | intergenic (‑2/+59) | USA300HOU_RS03335/USA300HOU_RS03340 | hypothetical protein/hypothetical protein | |||||
AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/691689‑691792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttagaaaatcgtTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATTC < USA300TCH1516_ALE/691823‑691734 AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1025813/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT < 1:1037143/91‑1AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1052164/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1578381/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1578218/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1577637/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:1024236/1‑91AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT < 1:4039612/91‑1AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTT > 1:3697072/1‑91 GTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTT < 1:3080441/91‑1 TAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTT > 1:3973142/1‑91 TAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTT > 1:2216577/1‑91 TAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTT > 1:1210360/1‑91 AAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTT < 1:3247942/91‑1 AAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCCAAATGCTTTCCGTTTTTA > 1:807571/1‑91 AAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTA < 1:1177038/91‑1 AACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGA > 1:779785/1‑91 AACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGA > 1:779896/1‑91 AAATTACAATCATCTTACGTCGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGC‑TTCCGTTTTTAGAAAAT < 1:1988544/91‑1 AAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAA < 1:2355811/91‑1 AATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAAT > 1:2516709/1‑91 AATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAAT < 1:785422/91‑1 AATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAAT < 1:1165548/91‑1 ATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATC < 1:3061852/91‑1 ATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATC > 1:3024496/1‑91 ATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATC > 1:3023683/1‑91 ATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATC > 1:2910952/1‑91 TTACACTCATCTTACGACGATTTTTGAATTTTGGAATTAGTCGGCGTTGTTCTATAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCG < 1:3861328/91‑1 TTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCG > 1:1780748/1‑91 TTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCG < 1:1902883/91‑1 TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT < 1:2890673/91‑1 TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT > 1:216416/1‑91 TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT > 1:674276/1‑91 TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT > 1:534329/1‑91 GGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAAC < 1:2802684/91‑1 TTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGA < 1:3567745/91‑1 ACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATT < 1:1159739/91‑1 ACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATT < 1:1155798/91‑1 GCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTA < 1:1335940/91‑1 GCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTA < 1:1335479/91‑1 TTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCG‑‑TGTGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGA > 1:954217/1‑91 TTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCG‑‑TGTGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGA > 1:954227/1‑91 TTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAA > 1:3926147/1‑91 TTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAA > 1:2248987/1‑91 TAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGC < 1:3377820/91‑1 TAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGC < 1:3374578/91‑1 TAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGC > 1:1799043/1‑91 AAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGA > 1:1318848/1‑91 AAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAG > 1:357921/1‑91 AATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGT > 1:3660891/1‑91 AATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGT > 1:451530/1‑91 AATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGT < 1:1121284/91‑1 ATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTA > 1:1232057/1‑91 CGTTTATGAAAATGATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAAT < 1:139274/91‑1 GTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATT > 1:2128834/1‑91 TTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATTC > 1:3626000/1‑91 TTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATTC < 1:1191404/91‑1 TTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATTC > 1:2273489/1‑91 AGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/691689‑691792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttagaaaatcgtTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGATATTCCTAAAGAACAACGCCGAGTAATTC < USA300TCH1516_ALE/691823‑691734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |