BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 691792	107 (1.090)	8 (0.100)	5/132	NT	7.4%	coding (30/1056 nt)	USA300HOU_RS03335	hypothetical protein
*	?	USA300TCH1516_ALE	= 691823	113 (1.390)	8 (0.100)	5/132	NT	7.4%	intergenic (‑2/+59)	USA300HOU_RS03335/USA300HOU_RS03340	hypothetical protein/hypothetical protein

Only 100 of 162 total aligned reads displayed.

GGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTT  >  USA300TCH1516_ALE/691733‑691913

ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTCCTTGCTTATTATTTTCATaa                                                                                             >  1:3829884/1‑91 (MQ=255)

ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATaa                                                                                             >  1:727547/1‑91 (MQ=255)

 gAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAa                                                                                            >  1:2273489‑M2/1‑90 (MQ=255)

     tACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgat                                                                                        >  1:1232057‑M2/1‑86 (MQ=255)

      aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                                                       <  1:1121284‑M2/91‑7 (MQ=255)

      aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                                                       >  1:3660891‑M2/1‑85 (MQ=255)

      aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                                                       >  1:451530‑M2/1‑85 (MQ=255)

       cTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattt                                                                                      >  1:357921‑M2/1‑84 (MQ=255)

        tCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatttt                                                                                     >  1:1318848‑M2/1‑83 (MQ=255)

           gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttcta                                                                                  >  1:1799043‑M2/1‑80 (MQ=255)

           gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttcta                                                                                  <  1:3374578‑M2/91‑12 (MQ=255)

                gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                                                             >  1:2499203/1‑91 (MQ=255)

                gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                                                             >  1:2500945/1‑91 (MQ=255)

                gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                                                             >  1:2616084/1‑91 (MQ=255)

                    tttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                         <  1:695800/91‑1 (MQ=255)

                    tttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                         <  1:695841/91‑1 (MQ=255)

                    tttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                         <  1:3357573/91‑1 (MQ=255)

                     ttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                                                        <  1:3971922/91‑1 (MQ=255)

                     ttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                                                        <  1:3300066/91‑1 (MQ=255)

                      tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                                                       >  1:3122872/1‑91 (MQ=255)

                      tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                                                       >  1:3124318/1‑91 (MQ=255)

                      tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                                                       <  1:3725903/91‑1 (MQ=255)

                      tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                                                       <  1:200557/91‑1 (MQ=255)

                       aGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACg                                                                      <  1:1672449/91‑1 (MQ=255)

                         gAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGaa                                                                    <  1:1881759/91‑1 (MQ=255)

                          aaTATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGaaa                                                                   >  1:1709612/1‑91 (MQ=255)

                          aaTATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGaaa                                                                   >  1:3058946/1‑91 (MQ=255)

                           atatCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAt                                                                  <  1:3450444/91‑1 (MQ=255)

                             atCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAttt                                                                >  1:2632519/1‑91 (MQ=255)

                             atCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAttt                                                                >  1:1851006/1‑91 (MQ=255)

                             atCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAttt                                                                <  1:432394/91‑1 (MQ=255)

                                 aaaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaa                                                            <  1:2352807/91‑1 (MQ=255)

                                  aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                                                           <  1:3921444/91‑1 (MQ=255)

                                  aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                                                           >  1:3746248/1‑91 (MQ=255)

                                  aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                                                           <  1:3920497/91‑1 (MQ=255)

                                    tGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTAATTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaataa                                                         >  1:3285051/1‑91 (MQ=255)

                                     gCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaa                                                        >  1:1408579/1‑91 (MQ=255)

                                      cTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                                                       <  1:3520452/91‑1 (MQ=255)

                                      cTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                                                       <  1:3520433/91‑1 (MQ=255)

                                       tttCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaaa                                                      >  1:1293970/1‑91 (MQ=255)

                                        ttCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAAt                                                     >  1:1104470/1‑91 (MQ=255)

                                         tCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCACAgattttctaaaaacggaaagcattttgatattcctaaagaa                                                     >  1:954227‑M2/1‑50 (MQ=255)

                                          ccGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATca                                                   >  1:3309213/1‑91 (MQ=255)

                                           cGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATcac                                                  >  1:2753479/1‑91 (MQ=255)

                                           cGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATcac                                                  >  1:2753792/1‑91 (MQ=255)

                                             tttttAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACAt                                                <  1:252875/91‑1 (MQ=255)

                                              ttttAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATc                                               <  1:3245764/91‑1 (MQ=255)

                                                ttAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATccc                                             >  1:259088/1‑91 (MQ=255)

                                                 tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc                                            <  1:1335940‑M2/91‑50 (MQ=255)

                                                 tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc                                            <  1:1335479‑M2/91‑50 (MQ=255)

                                                 tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCa                                            >  1:2968495/1‑91 (MQ=255)

                                                 tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCa                                            <  1:1306080/91‑1 (MQ=255)

                                                  aGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAg                                           <  1:2208998/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:1430930/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:3476277/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:1473902/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:4009032/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:916695/91‑1 (MQ=255)

                                                   gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                          <  1:916894/91‑1 (MQ=255)

                                                     aaaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTa                                        <  1:2924385/91‑1 (MQ=255)

                                                     aaaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTa                                        <  1:2283864/91‑1 (MQ=255)

                                                      aaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagt                                       <  1:1159739‑M2/91‑55 (MQ=255)

                                                      aaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagt                                       <  1:1155798‑M2/91‑55 (MQ=255)

                                                        tCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTCTTAATAAAAATCACATCCCAGTTA‑ttt                                    <  1:2375169/91‑1 (MQ=255)

                                                            gtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑ttttttt                                >  1:3388183/1‑91 (MQ=255)

                                                            gtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑ttttttt                                >  1:3387902/1‑91 (MQ=255)

                                                            gtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑ttttttt                                >  1:1918882/1‑91 (MQ=255)

                                                            gtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑ttttttt                                >  1:3392680/1‑91 (MQ=255)

                                                            gtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTAAATAAAAATCACATCCCAGTTA‑ttttttt                                >  1:3334700/1‑91 (MQ=255)

                                                               aaaaTGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAac                             <  1:1490740/91‑1 (MQ=255)

                                                                aaaTGTACTTGCTTATTATTTTCATGAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAaca                            <  1:3847764/91‑1 (MQ=255)

                                                                aaaTGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAaca                            <  1:3173817/91‑1 (MQ=255)

                                                                  aTGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACt                          <  1:630965/91‑1 (MQ=255)

                                                                    gTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTa                        <  1:389618/91‑1 (MQ=255)

                                                                    gTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTa                        <  1:1535974/91‑1 (MQ=255)

                                                                    gTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTa                        <  1:380396/91‑1 (MQ=255)

                                                                      aCTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATc                      >  1:2411114/1‑91 (MQ=255)

                                                                        ttGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCtt                    <  1:1258630/91‑1 (MQ=255)

                                                                        ttGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑CTTTTTTAACACTTATCtt                    >  1:1257738/1‑91 (MQ=255)

                                                                         tGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATcaaa                   <  1:2293425/91‑4 (MQ=255)

                                                                          gCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCtttt                  >  1:377976/1‑91 (MQ=255)

                                                                           cTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTg                 >  1:59573/1‑91 (MQ=255)

                                                                             tattatTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGAt               <  1:3752138/91‑1 (MQ=255)

                                                                               ttattTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATaa             <  1:3521452/91‑1 (MQ=255)

                                                                                tattTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAg            <  1:3170008/91‑1 (MQ=255)

                                                                                 attTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGt           <  1:2218031/91‑1 (MQ=255)

                                                                                 attTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGt           >  1:3560636/1‑91 (MQ=255)

                                                                                 attTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGt           <  1:1576286/91‑1 (MQ=255)

                                                                                  ttttCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTg          <  1:3574793/91‑1 (MQ=255)

                                                                                     tCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCtt       <  1:4129304/91‑1 (MQ=255)

                                                                                     tCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCtt       >  1:48890/1‑91 (MQ=255)

                                                                                       gtAAAGGATTTTAGAAAATCGTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCtttt     >  1:3550772/2‑91 (MQ=38)

                                                                                        tAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTTAACACTTATCTTTTGATAAGTGCtttt     <  1:1947261/91‑1 (MQ=255)

                                                                                        tAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCttttt    <  1:3737981/91‑1 (MQ=255)

                                                                                        tAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCttttt    <  1:2942083/91‑1 (MQ=255)

                                                                                        tAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCttttt    >  1:2010767/1‑91 (MQ=255)

                                                                                         aaaCGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCtttttt   >  1:1383108/1‑91 (MQ=255)

                                                                                         aaaCGATTTTCTAAAATCCTTTACGAAATTTTGAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCtttttt   <  1:3531074/91‑1 (MQ=255)

                                                                                         aaaCGATTTTCTAAAATCCTTTACGAAATTTATAATAAAAATCACATCCCAGTTA‑TTATTTTAACACTTATCTTTTGATAAGTGCtttttt   >  1:3686522/1‑91 (MQ=255)

                                                                                          aaCGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCttttttt  >  1:2975304/1‑91 (MQ=255)

GGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTA‑TTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTT  >  USA300TCH1516_ALE/691733‑691913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.