BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 691792	107 (1.090)	8 (0.100)	5/132	NT	7.4%	coding (30/1056 nt)	USA300HOU_RS03335	hypothetical protein
*	?	USA300TCH1516_ALE	= 691823	113 (1.390)	8 (0.100)	5/132	NT	7.4%	intergenic (‑2/+59)	USA300HOU_RS03335/USA300HOU_RS03340	hypothetical protein/hypothetical protein

Only 100 of 170 total aligned reads displayed.

TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTT  >  USA300TCH1516_ALE/691702‑691882

tACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT                                                                                            >  1:534329‑M1/1‑91 (MQ=255)

tACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT                                                                                            <  1:2890673‑M1/91‑1 (MQ=255)

tACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGT                                                                                            >  1:674276‑M1/1‑91 (MQ=255)

 aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCgtg                                                                                           >  1:3613729/1‑91 (MQ=255)

 aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCgtg                                                                                           >  1:587639/1‑91 (MQ=255)

   aaTCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGtt                                                                                         >  1:3886154/1‑91 (MQ=255)

    atcatcTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTa                                                                                        >  1:944991/1‑91 (MQ=255)

      catcTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTaaa                                                                                      <  1:4010553/91‑1 (MQ=255)

        tcTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAAt                                                                                    <  1:1061265/91‑1 (MQ=255)

         cTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATg                                                                                   >  1:946081/1‑91 (MQ=255)

           tACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTa                                                                                 >  1:3679444/1‑91 (MQ=255)

            acgacgATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTAc                                                                                >  1:2102333/1‑91 (MQ=255)

            acgacgATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTAc                                                                                >  1:835181/1‑91 (MQ=255)

                cgaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGc                                                                            <  1:4128256/91‑1 (MQ=255)

                 gaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCt                                                                           <  1:1198580/91‑1 (MQ=255)

                 gaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCt                                                                           <  1:1210726/91‑1 (MQ=255)

                  aTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                          <  1:301943/91‑1 (MQ=255)

                  aTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                          <  1:3252225/91‑1 (MQ=255)

                   tttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCtta                                                                         <  1:2992877/91‑1 (MQ=255)

                    ttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCttat                                                                        <  1:2928579/91‑1 (MQ=255)

                    ttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCttat                                                                        <  1:2430098/91‑1 (MQ=255)

                    ttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCttat                                                                        <  1:2160121/91‑1 (MQ=255)

                       tAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTtattat                                                                     <  1:2225057/91‑1 (MQ=255)

                       tAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTtattat                                                                     >  1:901174/1‑91 (MQ=255)

                             ttGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCAt                                                               <  1:1349928/91‑1 (MQ=255)

                              tGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATa                                                              <  1:1067092/91‑1 (MQ=255)

                               ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTttatgaaaataataagcaagtacattttaac                                                             <  1:2802684‑M1/91‑32 (MQ=255)

                               ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTCCTTGCTTATTATTTTCATaa                                                             >  1:3829884/1‑91 (MQ=255)

                               ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATaa                                                             <  1:2619360/91‑1 (MQ=255)

                                gAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAa                                                            >  1:3626000‑M2/1‑90 (MQ=255)

                                 aaTTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAac                                                           >  1:2128834‑M2/1‑89 (MQ=255)

                                  aTTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATCATTTTCATAAacg                                                          <  1:139274‑M2/91‑4 (MQ=255)

                                    tACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgat                                                        >  1:1232057‑M2/1‑86 (MQ=255)

                                     aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                       >  1:3660891‑M2/1‑85 (MQ=255)

                                     aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                       >  1:451530‑M2/1‑85 (MQ=255)

                                     aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgatt                                                       <  1:1121284‑M2/91‑7 (MQ=255)

                                          gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttcta                                                  <  1:1335479‑M1/91‑43 (MQ=255)

                                          gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttcta                                                  <  1:1335940‑M1/91‑43 (MQ=255)

                                          gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttcta                                                  <  1:3377820‑M2/91‑12 (MQ=255)

                                               gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                             >  1:2499203/1‑91 (MQ=255)

                                               gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                             >  1:2500945/1‑91 (MQ=255)

                                               gttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATc                                             >  1:2616084/1‑91 (MQ=255)

                                                ttCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATcc                                            <  1:1881367/91‑1 (MQ=255)

                                                   tttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                         <  1:695800/91‑1 (MQ=255)

                                                   tttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                         <  1:1123793/91‑1 (MQ=255)

                                                    ttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                        <  1:3971922/91‑1 (MQ=255)

                                                    ttAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                        <  1:3300066/91‑1 (MQ=255)

                                                     tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                       <  1:3725903/91‑1 (MQ=255)

                                                     tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                       <  1:200557/91‑1 (MQ=255)

                                                     tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                       >  1:3124318/1‑91 (MQ=255)

                                                     tAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTAc                                       >  1:3122872/1‑91 (MQ=255)

                                                        gAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGaa                                    <  1:1881759/91‑1 (MQ=255)

                                                         aaTATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGaaa                                   >  1:1709612/1‑91 (MQ=255)

                                                          atatCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAt                                  <  1:3450444/91‑1 (MQ=255)

                                                            atCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAttt                                >  1:1554118/1‑91 (MQ=255)

                                                            atCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAAttt                                >  1:1851006/1‑91 (MQ=255)

                                                                aaaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaa                            <  1:2352827/91‑1 (MQ=255)

                                                                 aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                           >  1:3746351/1‑91 (MQ=255)

                                                                 aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                           <  1:3920463/91‑1 (MQ=255)

                                                                 aaTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaat                           <  1:3921444/91‑1 (MQ=255)

                                                                  aTGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaata                          >  1:1310723/1‑91 (MQ=255)

                                                                   tGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTACTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaataa                         >  1:3284495/1‑91 (MQ=255)

                                                                     cTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                       <  1:3520622/91‑1 (MQ=255)

                                                                     cTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                       <  1:3520433/91‑1 (MQ=255)

                                                                      tttCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaaa                      >  1:1293970/1‑91 (MQ=255)

                                                                      tttCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaaa                      >  1:2275935/1‑91 (MQ=255)

                                                                       ttCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAAt                     >  1:1104470/1‑91 (MQ=255)

                                                                        tCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCACAgattttctaaaaacggaaagcattttgatattcctaaagaa                     >  1:954217‑M2/1‑50 (MQ=255)

                                                                        tCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCACAgattttctaaaaacggaaagcattttgatattcctaaagaa                     >  1:954227‑M2/1‑50 (MQ=255)

                                                                         ccGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATca                   >  1:3309213/1‑91 (MQ=255)

                                                                          cGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATcac                  >  1:2753792/1‑91 (MQ=255)

                                                                             ttttAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaa               >  1:3926147‑M1/1‑14 (MQ=255)

                                                                             ttttAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaa               >  1:2248987‑M1/1‑14 (MQ=255)

                                                                             ttttAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATc               <  1:3245764/91‑1 (MQ=255)

                                                                               ttAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATccc             >  1:259088/1‑91 (MQ=255)

                                                                                tAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc            <  1:3377820‑M1/91‑81 (MQ=255)

                                                                                tAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc            <  1:3374578‑M1/91‑81 (MQ=255)

                                                                                tAGAAAATCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc            >  1:1799043‑M1/1‑11 (MQ=255)

                                                                                tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgc            <  1:1335940‑M2/91‑50 (MQ=255)

                                                                                tAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCa            >  1:2968495/1‑91 (MQ=255)

                                                                                 aGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAg           >  1:1251690/1‑91 (MQ=255)

                                                                                 aGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAg           <  1:14595/91‑1 (MQ=255)

                                                                                 aGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAg           <  1:2208998/91‑1 (MQ=255)

                                                                                  gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt          <  1:2657480/91‑1 (MQ=255)

                                                                                  gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt          <  1:1430930/91‑1 (MQ=255)

                                                                                  gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt          <  1:4009032/91‑1 (MQ=255)

                                                                                  gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt          <  1:916894/91‑1 (MQ=255)

                                                                                  gAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt          <  1:3310776/91‑1 (MQ=255)

                                                                                   aaaaTCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccga         >  1:1318848‑M1/1‑8 (MQ=255)

                                                                                    aaaTCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgag        >  1:357921‑M1/1‑7 (MQ=255)

                                                                                    aaaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTa        <  1:705343/91‑1 (MQ=255)

                                                                                    aaaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTa        <  1:2283864/91‑1 (MQ=255)

                                                                                     aaTCGTttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagt       >  1:451530‑M1/1‑6 (MQ=255)

                                                                                     aaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagt       <  1:1159739‑M2/91‑55 (MQ=255)

                                                                                     aaTCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagt       <  1:1155798‑M2/91‑55 (MQ=255)

                                                                                       tCGTGTTAAAATGTACTTGCTTATTATTTTCATAAacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagtaa     <  1:3567745‑M2/91‑57 (MQ=255)

                                                                                        cGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAtttt    <  1:3499322/91‑1 (MQ=255)

                                                                                         gtgtTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttttt   >  1:3063934/1‑91 (MQ=255)

                                                                                          tttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagtaattc  >  1:2273489‑M1/1‑1 (MQ=255)

                                                                                          tttatgaaaataataagcaagtacattttaacacgattttctaaaaacggaaagcattttgatattcctaaagaacaacgccgagtaattc  <  1:1191404‑M1/91‑91 (MQ=255)

TACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTT  >  USA300TCH1516_ALE/691702‑691882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.