| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 705182 = | 102 (1.040) | 13 (0.150) | 6/142 | NT | 14.6% | intergenic (+932/+228) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA |
| ? | USA300TCH1516_ALE | 705222 = | 61 (0.700) | intergenic (+972/+188) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA | |||||
ATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705279‑705182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT > USA300TCH1516_ALE/705222‑705310 ATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAG < 1:1078478/91‑1 TATATTACCCGCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGA < 1:1916598/91‑1 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA < 1:3013814/91‑1 ATATGACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTGGAA > 1:3274381/1‑91 ATACTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA < 1:3352423/91‑1 ATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGT > 1:1095075/1‑91 ATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGT < 1:3273804/91‑1 ATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGT > 1:1757445/1‑91 TACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTC < 1:1420403/91‑1 TACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTC > 1:2452018/1‑91 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT > 1:665176/1‑91 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT > 1:3000914/1‑91 AACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTTATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAA > 1:3599605/1‑91 ACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAAT > 1:223974/1‑91 ACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAAT > 1:2355259/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:78945/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:3051124/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:2134574/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:2134055/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:2134040/1‑91 TTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATAGTAATAGGAGGGTAATAT > 1:3556158/1‑91 CTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATAT > 1:1498469/1‑91 CTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATAT > 1:1498125/1‑91 CTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATAT > 1:1498662/1‑91 CTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATAT > 1:2919296/1‑91 AGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTAT < 1:3384586/91‑1 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT < 1:3683173/91‑1 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 1:587397/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 1:587545/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 1:939824/1‑91 GTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGC > 1:505847/1‑91 GTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGC > 1:507370/1‑91 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC > 1:1439779/1‑91 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC < 1:962831/91‑1 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC < 1:994033/91‑1 TCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCT < 1:3124529/91‑1 CTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT > 1:3189245/1‑91 CTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTACTAGCCTT > 1:2076993/1‑91 ATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705279‑705182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT > USA300TCH1516_ALE/705222‑705310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |