| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 712543 | 108 (1.100) | 13 (0.140) | 7/148 | NT | 11.2% | intergenic (+22/‑77) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase |
| ? | USA300TCH1516_ALE | = 712566 | 107 (1.180) | intergenic (+45/‑54) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase | |||||
TTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712451‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 TTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACC > 1:1725062/1‑91 TGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCC < 1:740022/91‑1 TGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCC < 1:3173460/91‑1 TGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCC < 1:2893297/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 1:2246050/91‑1 ATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGGAACCCCACT < 1:1726686/91‑1 GTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGT > 1:3227528/1‑91 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:1555376/91‑1 TGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTT < 1:2822254/91‑1 GCGTACTTAGACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTA < 1:3969433/91‑1 GCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTA < 1:811481/91‑1 GCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTA < 1:811319/91‑1 GCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTA < 1:1311006/91‑1 CGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAG < 1:2985147/91‑1 CGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAG < 1:922701/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:3157202/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:501261/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 1:2161643/91‑1 ATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACA < 1:2565023/91‑1 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT < 1:2979153/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:3418563/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:656084/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA < 1:1830671/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:1789908/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:986968/1‑91 CCCCACTTCCATATATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:3197184/1‑91 CCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGT > 1:1833943/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:2527167/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:2278885/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA > 1:742504/1‑91 TTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712451‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |