BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 712543	108 (1.100)	13 (0.140)	7/148	NT	11.2%	intergenic (+22/‑77)	tagG/tarB	Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase
*	?	USA300TCH1516_ALE	= 712566	107 (1.180)	13 (0.140)	7/148	NT	11.2%	intergenic (+45/‑54)	tagG/tarB	Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase

Only 100 of 158 total aligned reads displayed.

GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAAT  >  USA300TCH1516_ALE/712453‑712633

gCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC                                                                                            <  1:2246050‑M1/91‑1 (MQ=255)

 ccATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCg                                                                                           <  1:495510/91‑1 (MQ=255)

  cATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGc                                                                                          >  1:3104452/1‑91 (MQ=255)

   aTTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGGAACCCCact                                                                                         <  1:1726686‑M1/91‑4 (MQ=255)

     tttCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTaa                                                                                       >  1:3790256/1‑91 (MQ=255)

     tttCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTaa                                                                                       >  1:3790242/1‑91 (MQ=255)

      ttCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAAc                                                                                      >  1:1643708/1‑91 (MQ=255)

      ttCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAAc                                                                                      >  1:2658791/1‑91 (MQ=255)

       tCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAAcc                                                                                     <  1:611651/91‑1 (MQ=255)

         tttGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCAt                                                                                   >  1:3339594/1‑91 (MQ=255)

          ttGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCAtt                                                                                  >  1:2675867/1‑91 (MQ=255)

          ttGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCAtt                                                                                  <  1:2874189/91‑1 (MQ=255)

          ttGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCAtt                                                                                  <  1:2874262/91‑1 (MQ=255)

          ttGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCAtt                                                                                  <  1:1440981/91‑1 (MQ=255)

                 tGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAAt                                                                           <  1:845476/91‑1 (MQ=255)

                  ggTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATg                                                                          >  1:2208874/1‑91 (MQ=255)

                   gTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggt                                                                         >  1:3227528‑M1/1‑72 (MQ=255)

                    tGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggtt                                                                        <  1:1555376‑M1/91‑21 (MQ=255)

                    tGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggtt                                                                        <  1:2822254‑M1/91‑21 (MQ=255)

                     gCGTACTTAGACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggtta                                                                       <  1:3969433‑M1/91‑22 (MQ=255)

                     gCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggtta                                                                       <  1:1311006‑M1/91‑22 (MQ=255)

                     gCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggtta                                                                       <  1:811481‑M1/91‑22 (MQ=255)

                     gCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGaa                                                                       >  1:916543/1‑91 (MQ=255)

                     gCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGaa                                                                       >  1:2622539/1‑91 (MQ=255)

                     gCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGaa                                                                       >  1:502440/1‑91 (MQ=255)

                      cGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggttag                                                                      <  1:2985147‑M1/91‑23 (MQ=255)

                      cGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAg                                                                      <  1:3357913/91‑1 (MQ=255)

                        tACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTg                                                                    >  1:742504‑M2/1‑90 (MQ=255)

                        tACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTg                                                                    >  1:2527167‑M2/1‑90 (MQ=255)

                        tACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTg                                                                    >  1:2278885‑M2/1‑90 (MQ=255)

                         aCTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCacttccatttattaatggttagcgg                                                                   <  1:2161643‑M1/91‑26 (MQ=255)

                         aCTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTgg                                                                   >  1:1833943‑M2/1‑89 (MQ=255)

                            tACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggt                                                                >  1:3418563‑M2/1‑86 (MQ=255)

                            tACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggt                                                                >  1:656084‑M2/1‑86 (MQ=255)

                            tACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggt                                                                >  1:1789908‑M2/1‑86 (MQ=255)

                            tACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggt                                                                <  1:1830671‑M2/91‑6 (MQ=255)

                             acacATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggtt                                                               <  1:2979153‑M2/91‑7 (MQ=255)

                               acaTGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCa                                                             <  1:1890861/91‑1 (MQ=255)

                                caTGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAt                                                            <  1:3644398/91‑1 (MQ=255)

                                  tGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAttt                                                          <  1:1175877/91‑1 (MQ=255)

                                  tGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGGTCAttt                                                          >  1:1635060/1‑91 (MQ=255)

                                   gAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAtttt                                                         <  1:4067402/91‑1 (MQ=255)

                                   gAAATATAGAGATCAATTTACAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAtttt                                                         <  1:355883/91‑1 (MQ=255)

                                    aaaTATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCAttttt                                                        >  1:425092/1‑91 (MQ=255)

                                      atatAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGt                                                      >  1:2499558/1‑91 (MQ=255)

                                      atatAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGt                                                      >  1:497045/1‑91 (MQ=255)

                                       tataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGtt                                                     <  1:780147/91‑1 (MQ=255)

                                        ataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGttt                                                    <  1:1293738/91‑1 (MQ=255)

                                        ataGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGttt                                                    <  1:780178/91‑1 (MQ=255)

                                         taGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTta                                                   <  1:2374366/91‑1 (MQ=255)

                                          agagATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTtat                                                  >  1:549561/1‑91 (MQ=255)

                                          agagATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTtat                                                  >  1:1190141/1‑91 (MQ=255)

                                            agaTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATaa                                                <  1:857828/91‑1 (MQ=255)

                                             gaTCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAAt                                               <  1:1998290/91‑1 (MQ=255)

                                                  aTTTGCAGACTTCTTGTAATATATTGATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAg                                          <  1:3870491/91‑1 (MQ=255)

                                                     tGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTaa                                       >  1:1193719/1‑91 (MQ=255)

                                                      gCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTaaa                                      <  1:2833563/91‑1 (MQ=255)

                                                       cAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAAt                                     >  1:237042/1‑91 (MQ=255)

                                                        aGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATa                                    <  1:1478344/91‑1 (MQ=255)

                                                          aCTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAAc                                  <  1:882149/91‑1 (MQ=255)

                                                           cttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACa                                 >  1:1185247/1‑91 (MQ=255)

                                                            ttcttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACat                                <  1:1798917/91‑1 (MQ=255)

                                                             tcttGTAATATATTTATATGACGAATCCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACata                               <  1:3849553/91‑1 (MQ=255)

                                                              cttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACatat                              <  1:2611047/91‑1 (MQ=255)

                                                               ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                             <  1:3762216/91‑1 (MQ=255)

                                                               ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                             >  1:3102274/1‑91 (MQ=255)

                                                               ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                             >  1:1357709/1‑91 (MQ=255)

                                                               ttGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATAtt                             >  1:2549059/1‑91 (MQ=255)

                                                                tGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTggggtttcgtcatataaatatattacaagaagtctgcaaat                            <  1:2565023‑M2/91‑42 (MQ=255)

                                                                 gTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTaa                           >  1:2441532/1‑91 (MQ=255)

                                                                  tAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAg                          >  1:3333585/1‑91 (MQ=255)

                                                                   aaTATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGt                         <  1:3577644/91‑1 (MQ=255)

                                                                   aaTATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGt                         <  1:3577652/91‑1 (MQ=255)

                                                                     tatatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTg                       <  1:3786376/91‑1 (MQ=255)

                                                                     tatatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTg                       >  1:2739510/1‑91 (MQ=255)

                                                                       tatTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgt                     >  1:1276040/1‑91 (MQ=255)

                                                                         tttATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGgtgt                   >  1:1295932/1‑91 (MQ=255)

                                                                           tataTGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtat                 <  1:2429752/91‑1 (MQ=255)

                                                                            atatGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtatt                >  1:2509135/1‑91 (MQ=255)

                                                                              atGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtattat              >  1:3063020/1‑91 (MQ=255)

                                                                              atGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtattat              >  1:3064397/1‑91 (MQ=255)

                                                                              atGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGtattat              >  1:22547/1‑91 (MQ=255)

                                                                                gACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGa            <  1:1532244/91‑1 (MQ=255)

                                                                                 aCGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGaa           <  1:1889474/91‑1 (MQ=255)

                                                                                 aCGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGaa           <  1:24022/91‑1 (MQ=255)

                                                                                   gAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACg         <  1:2666818/91‑1 (MQ=255)

                                                                                    aaaCCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGt        <  1:1353501/91‑1 (MQ=255)

                                                                                    aaaCCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGt        <  1:2580084/91‑1 (MQ=255)

                                                                                      aCCCCacttccatttattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgta      >  1:986968‑M1/1‑5 (MQ=255)

                                                                                      aCCCCacttccatttattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgta      >  1:656084‑M1/1‑5 (MQ=255)

                                                                                      aCCCCacttccatttattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgta      <  1:1830671‑M1/91‑87 (MQ=255)

                                                                                      aCCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGttt      <  1:1018572/91‑1 (MQ=255)

                                                                                       ccccacttccatatattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgtaa     >  1:3197184‑M1/1‑4 (MQ=255)

                                                                                        cccGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTta    <  1:1719731/91‑1 (MQ=255)

                                                                                         ccGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaa   >  1:1333862/1‑91 (MQ=255)

                                                                                         ccGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaa   >  1:1158195/1‑91 (MQ=255)

                                                                                          cacttccatttattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgtaagta  >  1:742504‑M1/1‑1 (MQ=255)

                                                                                          cacttccatttattaatggttagcggggtttcgtcatataaatatattacaagaagtctgcaaattgatctctatatttcatgtgtaagta  >  1:2278885‑M1/1‑1 (MQ=255)

                                                                                          cGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaat  >  1:3199124/1‑91 (MQ=255)

                                                                                          cGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTtaat  >  1:2893285/1‑91 (MQ=255)

GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCGCTAACCATTAATAAATGGAAGTGGGGTTCATTTTTGTTTATAATTTAAGTAAATAACATATTAAGTTGGTGTATTATGAACGTTTTAAT  >  USA300TCH1516_ALE/712453‑712633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.