| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 720543 | 107 (1.090) | 12 (0.130) | 6/148 | NT | 10.7% | intergenic (+153/‑372) | nupG/USA300HOU_RS03495 | Purine nucleoside transport protein NupG/hypothetical protein |
| ? | USA300TCH1516_ALE | = 720571 | 101 (1.110) | intergenic (+181/‑344) | nupG/USA300HOU_RS03495 | Purine nucleoside transport protein NupG/hypothetical protein | |||||
GTCTATTGATATAGGTGAGATGCTTGGACTTTTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/720449‑720543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA < USA300TCH1516_ALE/720571‑720482 GTCTATTGATATAGGTGAGATGCTTGGACTTTTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTAT > 1:2888407/1‑91 TGATATAGGTGAGATGCTTGGACTTTTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGC < 1:1119476/91‑1 GAGATGCTTGGACTTTTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATT < 1:3229777/91‑1 TTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGTATTACCATGTGCACTTGG < 1:2786417/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:1065007/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:1067945/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:1095944/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:1151794/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:2799033/91‑1 TTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTT < 1:2798905/91‑1 TTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTT < 1:1345450/91‑1 ATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCT < 1:2689289/91‑1 ATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCT < 1:2688908/91‑1 TAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTT < 1:3352112/91‑1 ATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAAT < 1:741611/91‑1 ATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAAT < 1:2048325/91‑1 AAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAAT < 1:2316086/91‑1 AAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAAT > 1:1918324/1‑91 AAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAAT > 1:3712275/1‑91 AAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAAT > 1:1018300/1‑91 AAGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATA < 1:2364225/91‑1 AGCCAAGTGTGTTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA > 1:135110/1‑91 AGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA > 1:1727959/1‑91 AGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA > 1:1655428/1‑91 AGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA > 1:494407/1‑91 GTCTATTGATATAGGTGAGATGCTTGGACTTTTTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/720449‑720543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaGCCAAGTGTATTACCATGTGCACTTGGTTTTTATAATGCTTCAATTTCGGTAACTTTAAAAATATTTAAATACCTTTATATCAATAATAA < USA300TCH1516_ALE/720571‑720482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |