BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 720543	107 (1.090)	12 (0.130)	6/148	NT	10.7%	intergenic (+153/‑372)	nupG/USA300HOU_RS03495	Purine nucleoside transport protein NupG/hypothetical protein
*	?	USA300TCH1516_ALE	= 720571	101 (1.110)	12 (0.130)	6/148	NT	10.7%	intergenic (+181/‑344)	nupG/USA300HOU_RS03495	Purine nucleoside transport protein NupG/hypothetical protein

Only 100 of 141 total aligned reads displayed.

TTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAA  >  USA300TCH1516_ALE/720481‑720661

tttATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGc                                                                                            >  1:1088870/1‑91 (MQ=255)

tttATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGc                                                                                            >  1:592746/1‑91 (MQ=255)

 ttattaTTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCt                                                                                           >  1:1727959‑M2/1‑90 (MQ=255)

 ttattaTTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCt                                                                                           >  1:1655428‑M2/1‑90 (MQ=255)

 ttattaTTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCt                                                                                           >  1:494407‑M2/1‑90 (MQ=255)

 ttattaTTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAACACACTTGGCt                                                                                           >  1:135110‑M2/1‑90 (MQ=255)

  tattatTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCtt                                                                                          <  1:2364225‑M2/91‑3 (MQ=255)

   attattGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttt                                                                                         >  1:1018300‑M2/1‑88 (MQ=255)

   attattGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttt                                                                                         >  1:3712275‑M2/1‑88 (MQ=255)

   attattGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttt                                                                                         <  1:2316086‑M2/91‑4 (MQ=255)

      attGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttttat                                                                                      <  1:2048325‑M2/91‑7 (MQ=255)

      attGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttttat                                                                                      <  1:741611‑M2/91‑7 (MQ=255)

       ttGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCTAGTGCACATGGTAATACACTTGGCTTTTATg                                                                                     <  1:3687299/91‑1 (MQ=255)

       ttGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATg                                                                                     <  1:2272390/91‑1 (MQ=255)

        tGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATgg                                                                                    >  1:2671190/1‑91 (MQ=255)

              aaaGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATg                                                                              <  1:1577779/91‑1 (MQ=255)

              aaaGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATg                                                                              <  1:3134652/91‑1 (MQ=255)

               aaGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGa                                                                             >  1:1401413/1‑91 (MQ=255)

                 ggTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat                                                                           >  1:419845/1‑91 (MQ=255)

                 ggTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat                                                                           <  1:1925946/91‑1 (MQ=255)

                 ggTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat                                                                           <  1:667843/91‑1 (MQ=255)

                  gTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAata                                                                          <  1:626982/91‑1 (MQ=255)

                   tATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAatat                                                                         >  1:3311266/1‑91 (MQ=255)

                   tATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAatat                                                                         >  1:3311267/1‑91 (MQ=255)

                    aTTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAAtatt                                                                        <  1:1934622/91‑1 (MQ=255)

                    aTTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAAtatt                                                                        <  1:946025/91‑1 (MQ=255)

                     tttAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGCAATGAAtatta                                                                       >  1:3754089/1‑91 (MQ=255)

                     tttAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAAtatta                                                                       >  1:2756767/1‑91 (MQ=255)

                       tAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATattatt                                                                     >  1:1848239/1‑91 (MQ=255)

                       tAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATattatt                                                                     >  1:3290101/1‑91 (MQ=255)

                       tAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATattatt                                                                     >  1:1273262/1‑91 (MQ=255)

                        aaaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTg                                                                    <  1:2905009/91‑1 (MQ=255)

                          atatTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTa                                                                  <  1:1308054/91‑1 (MQ=255)

                           tatTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTAc                                                                 >  1:3527355/1‑91 (MQ=255)

                             tttttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACat                                                               >  1:4131722/1‑91 (MQ=255)

                              ttttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACata                                                              >  1:1250165/1‑91 (MQ=255)

                               tttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACatat                                                             <  1:398604/91‑1 (MQ=255)

                               tttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACatat                                                             >  1:304782/1‑91 (MQ=255)

                                 tAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGa                                                           <  1:1723829/91‑1 (MQ=255)

                                 tAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGa                                                           >  1:1568772/1‑91 (MQ=255)

                                   aaGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACa                                                         >  1:3508532/1‑91 (MQ=255)

                                    aGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAg                                                        <  1:2987103/91‑1 (MQ=255)

                                    aGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAg                                                        >  1:32209/1‑91 (MQ=255)

                                     gTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGt                                                       >  1:3224291/1‑91 (MQ=255)

                                      ttACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTa                                                      <  1:2040153/91‑1 (MQ=255)

                                        aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAg                                                    >  1:3437455/1‑91 (MQ=255)

                                        aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAg                                                    >  1:1204239/1‑91 (MQ=255)

                                        aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAg                                                    <  1:4127274/91‑1 (MQ=255)

                                         ccGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAgg                                                   >  1:977740/1‑91 (MQ=255)

                                            aaaTTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACt                                                <  1:3268201/91‑1 (MQ=255)

                                             aaTTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTa                                               >  1:2031525/1‑91 (MQ=255)

                                               ttGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAgg                                             <  1:1480202/91‑1 (MQ=255)

                                               ttGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAgg                                             <  1:1480025/91‑1 (MQ=255)

                                                tGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGt                                            <  1:634800/91‑1 (MQ=255)

                                                tGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGt                                            <  1:1157621/91‑1 (MQ=255)

                                                 gAAGCATTACAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTa                                           >  1:2091676/1‑91 (MQ=255)

                                                   aGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttat                                         <  1:2688908‑M2/91‑52 (MQ=255)

                                                          taAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAg                                  >  1:2150622/1‑91 (MQ=255)

                                                           aaaaaCCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataa                                 <  1:1345450‑M2/91‑60 (MQ=255)

                                                           aaaaaCCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACGGGCATAGt                                 >  1:875144/1‑91 (MQ=255)

                                                            aaaaCCAAGTGCACATGGTAATACACTTGGCATTTCTGGGAAAAGAATCTTATTGTACATTTGACAGTAAGGACAAGGCACAGTCATAGTa                                >  1:1441659/1‑91 (MQ=255)

                                                              aaCCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataataa                              <  1:1151794‑M2/91‑63 (MQ=255)

                                                              aaCCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataataa                              <  1:1095944‑M2/91‑63 (MQ=255)

                                                              aaCCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataataa                              <  1:1065007‑M2/91‑63 (MQ=255)

                                                              aaCCAAGTGCACATGGTAATACACTTGGCttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataataa                              <  1:2798905‑M2/91‑63 (MQ=255)

                                                              aaCCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACt                              >  1:3044753/1‑91 (MQ=255)

                                                               aCCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATCATTGTACATATGACAGTAAGGACTAGGTAGAGTCATAGTACtt                             >  1:4149990/1‑91 (MQ=255)

                                                                ccAAGTGCACATGGTAATACACTTGGTttttataatgcttcaatttcggtaactttaaaaatatttaaatacctttatatcaataataaaa                            <  1:2786417‑M2/91‑65 (MQ=255)

                                                                ccAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTc                            <  1:1239108/91‑1 (MQ=255)

                                                                ccAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTc                            >  1:1428292/1‑91 (MQ=255)

                                                                   aGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAg                         <  1:512514/91‑1 (MQ=255)

                                                                   aGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAg                         >  1:3781050/1‑91 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        <  1:3243557/91‑1 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        <  1:1007795/91‑1 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        >  1:1042968/1‑91 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        >  1:2799373/1‑91 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        >  1:2525090/1‑91 (MQ=255)

                                                                    gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc                        >  1:1460443/1‑91 (MQ=255)

                                                                     tGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCa                       <  1:1701239/91‑1 (MQ=255)

                                                                      gCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaa                      <  1:971574/91‑1 (MQ=255)

                                                                        acaTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaaaa                    <  1:1146798/91‑1 (MQ=255)

                                                                         caTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAt                   >  1:1945773/1‑91 (MQ=255)

                                                                         caTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAt                   <  1:3738841/91‑1 (MQ=255)

                                                                           tGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAttt                 <  1:3902286/91‑1 (MQ=255)

                                                                           tGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAttt                 >  1:3779713/1‑91 (MQ=255)

                                                                           tGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAttt                 <  1:3359431/91‑1 (MQ=255)

                                                                           tGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAttt                 >  1:3920053/1‑91 (MQ=255)

                                                                             gTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgt               <  1:358554/91‑1 (MQ=255)

                                                                              tAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgtt              <  1:3691483/91‑1 (MQ=255)

                                                                              tAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgtt              <  1:1061853/91‑1 (MQ=255)

                                                                               aaTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttt             <  1:2042151/91‑1 (MQ=255)

                                                                               aaTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttt             <  1:449579/91‑1 (MQ=255)

                                                                               aaTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttt             >  1:2451223/1‑91 (MQ=255)

                                                                                 tACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttttg           >  1:2846698/1‑91 (MQ=255)

                                                                                  acacGTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttttgt          <  1:3452802/91‑1 (MQ=255)

                                                                                     cTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGttat       <  1:1118922/91‑1 (MQ=255)

                                                                                      ttGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGttatt      <  1:1914215/91‑1 (MQ=255)

                                                                                          cTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATaa  >  1:509339/1‑91 (MQ=255)

                                                                                          cTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATaa  >  1:2049214/1‑91 (MQ=255)

                                                                                          cTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATaa  >  1:3933873/1‑91 (MQ=255)

TTTATTATTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAA  >  USA300TCH1516_ALE/720481‑720661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.