| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 724910 | 63 (0.640) | 13 (0.150) | 5/140 | NT | 17.6% | intergenic (+30/‑204) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK |
| ? | USA300TCH1516_ALE | = 724929 | 67 (0.780) | intergenic (+49/‑185) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK | |||||
AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/724811‑724910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctatgaaaAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAA < USA300TCH1516_ALE/724929‑724844 AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATT < 1:2758521/91‑1 GGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTG > 1:610541/1‑91 TTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTAT < 1:2695665/91‑1 TTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTAT < 1:2907872/91‑1 TTGTCATAGCAATTATTGGTGCACCATATTTCTTATATTTAATGTACAAAACGTAAAATGTATAGTGTCAATGGACACAACTTATTGCTAT < 1:3860612/91‑1 TGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATG < 1:2285665/91‑1 GTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGA > 1:2789035/1‑91 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:1464021/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:922001/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:776812/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:3941305/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:3167877/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:3167459/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:1954299/91‑1 TTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCA < 1:1177974/91‑1 TTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCA < 1:724312/91‑1 TTCTTATATTTAATGTACAAAACGAAAAAGGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCAT < 1:3326326/91‑1 TCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATA < 1:776498/91‑1 TCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATA < 1:776500/91‑1 TGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGT < 1:4027858/91‑1 GCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAA < 1:3901956/91‑1 GCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAA < 1:4020497/91‑1 CTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAG < 1:472288/91‑1 CTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAG > 1:3613387/1‑91 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA > 1:3105242/1‑91 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 1:2879311/91‑1 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 1:3690197/91‑1 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 1:3690182/91‑1 ATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAA > 1:80037/1‑91 TGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAA < 1:1623105/91‑1 AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/724811‑724910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctatgaaaAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAA < USA300TCH1516_ALE/724929‑724844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |