New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 72491063 (0.640)13 (0.150) 5/140 NT 17.6% intergenic (+30/‑204) feuC_1/dhaK Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK
?USA300TCH1516_ALE = 724929 67 (0.780)intergenic (+49/‑185) feuC_1/dhaK Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK

Only 100 of 104 total aligned reads displayed.

TTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAAAA  >  USA300TCH1516_ALE/724844‑725020
                                                                                     |                                                                                           
tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttca                                                                                        <  1:1623105‑M2/91‑6 (MQ=255)
 ttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcat                                                                                       >  1:80037‑M2/1‑85 (MQ=255)
  tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata                                                                                      <  1:3690182‑M2/91‑8 (MQ=255)
  tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata                                                                                      <  1:2879311‑M2/91‑8 (MQ=255)
  tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata                                                                                      >  1:3105242‑M2/1‑84 (MQ=255)
  tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata                                                                                      <  1:3690197‑M2/91‑8 (MQ=255)
   cTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatag                                                                                     <  1:472288‑M2/91‑9 (MQ=255)
   cTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatag                                                                                     >  1:3613387‑M2/1‑83 (MQ=255)
    ttATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagc                                                                                    <  1:3901956‑M2/91‑10 (MQ=255)
    ttATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagc                                                                                    <  1:4020497‑M2/91‑10 (MQ=255)
         tttAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt                                                                               >  1:3571574/1‑91 (MQ=255)
         tttAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt                                                                               >  1:1957591/1‑91 (MQ=255)
           tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttttt                                                                             <  1:1985986/91‑1 (MQ=255)
           tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttttt                                                                             >  1:2543572/1‑91 (MQ=255)
                tACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTtttattta                                                                        >  1:2707100/1‑91 (MQ=255)
                 aCAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTaa                                                                       <  1:3124643/91‑1 (MQ=255)
                   aaaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATg                                                                     >  1:3264046/1‑91 (MQ=255)
                    aaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGa                                                                    <  1:2192087/91‑1 (MQ=255)
                     aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAagag                                                                   >  1:3264387/1‑91 (MQ=255)
                     aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAg                                                                   <  1:2780384/91‑1 (MQ=255)
                     aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAg                                                                   <  1:2780453/91‑1 (MQ=255)
                     aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAg                                                                   >  1:909887/1‑91 (MQ=255)
                      aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc                                                                  <  1:2311000/91‑1 (MQ=255)
                      aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc                                                                  >  1:1774146/1‑91 (MQ=255)
                        gAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCa                                                                <  1:2125157/91‑1 (MQ=255)
                          aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt                                                              <  1:3425806/91‑1 (MQ=255)
                          aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTAAATAATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt                                                              >  1:1664465/1‑91 (MQ=255)
                           aaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTc                                                             <  1:320864/91‑1 (MQ=255)
                             aTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCaa                                                           <  1:1766941/91‑1 (MQ=255)
                              tGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAg                                                          >  1:540843/1‑91 (MQ=255)
                              cttataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAg                                                          <  1:1152985/89‑1 (MQ=255)
                                tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc                                                        >  1:853064/1‑91 (MQ=255)
                                  taGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATGAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACta                                                      >  1:3285715/1‑91 (MQ=255)
                                   aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCTACTCAAGACtat                                                     <  1:3176350/91‑1 (MQ=255)
                                   aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat                                                     <  1:4030197/91‑1 (MQ=255)
                                   aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat                                                     <  1:3641122/91‑1 (MQ=255)
                                    gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt                                                    >  1:3480965/1‑91 (MQ=255)
                                    gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt                                                    <  1:1493966/91‑1 (MQ=255)
                                       tCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttat                                                 <  1:1551594/91‑1 (MQ=255)
                                          aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt                                              >  1:312713/1‑91 (MQ=255)
                                          aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt                                              >  1:2938730/1‑91 (MQ=255)
                                           tGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAttttt                                             >  1:1149148/1‑91 (MQ=255)
                                              acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                          <  1:1527994/91‑1 (MQ=255)
                                              acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                          >  1:1133732/1‑91 (MQ=255)
                                                acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtaca                                        <  1:4027858‑M2/91‑54 (MQ=255)
                                                  aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa                                      >  1:742520/1‑91 (MQ=255)
                                                  aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa                                      >  1:3317138/1‑91 (MQ=255)
                                                  aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa                                      >  1:1636283/1‑91 (MQ=255)
                                                   aCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataat                                     >  1:1976932/1‑91 (MQ=255)
                                                   aCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataat                                     >  1:1977302/1‑91 (MQ=255)
                                                    cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg                                    >  1:2724080/1‑91 (MQ=255)
                                                    cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg                                    <  1:2627839/91‑1 (MQ=255)
                                                    cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg                                    <  1:438028/91‑1 (MQ=255)
                                                       aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc                                 >  1:1268323/1‑91 (MQ=255)
                                                       aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc                                 >  1:946115/1‑91 (MQ=255)
                                                           cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                             >  1:1053634/1‑91 (MQ=255)
                                                            tATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga                            <  1:776498‑M2/91‑66 (MQ=255)
                                                            tATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga                            <  1:776500‑M2/91‑66 (MQ=255)
                                                             aTGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacctttttcgttttgtacattaaatataagaa                           <  1:3326326‑M2/91‑67 (MQ=255)
                                                             aTGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTaa                           >  1:1863961/1‑91 (MQ=255)
                                                              tGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa                          <  1:1177974‑M2/91‑68 (MQ=255)
                                                              tGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa                          <  1:724312‑M2/91‑68 (MQ=255)
                                                                aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                        <  1:3333394/91‑1 (MQ=255)
                                                                aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                        <  1:3449702/91‑1 (MQ=255)
                                                                aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                        <  1:440266/91‑1 (MQ=255)
                                                                aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                        <  1:441674/91‑1 (MQ=255)
                                                                aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTAATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                        >  1:3490389/1‑91 (MQ=255)
                                                                aaaGGCACTTTATTAGAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAATATTTATTTTTTCAATAATGAACCATTAAGtt                        >  1:3529071/1‑91 (MQ=255)
                                                                  aGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAt                      <  1:2001590/91‑1 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:776812‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:3167459‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:922001‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:3167877‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:1954299‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaatacggt                    <  1:1464021‑M2/91‑74 (MQ=255)
                                                                    gCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCa                    >  1:2996663/1‑91 (MQ=255)
                                                                     cACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCaa                   >  1:1595521/1‑91 (MQ=255)
                                                                      aCTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAag                  >  1:3794348/1‑91 (MQ=255)
                                                                       cTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAaga                 >  1:3988262/1‑91 (MQ=255)
                                                                       cTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAaga                 >  1:679659/1‑91 (MQ=255)
                                                                         ttattaTAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg               >  1:656893/1‑91 (MQ=255)
                                                                            ttatAAGGCTTTTCATAGCATTTTTTATTTAATGATCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATc            <  1:151733/91‑1 (MQ=255)
                                                                            ttatAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATc            <  1:149049/91‑1 (MQ=255)
                                                                            ttatAAGGCTTTTCATAGCATTTTTTATGTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATc            <  1:148443/91‑1 (MQ=255)
                                                                             tataAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCt           >  1:1305341/1‑91 (MQ=255)
                                                                              ataAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCtt          >  1:3232803/1‑91 (MQ=255)
                                                                                aaGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTAt        <  1:1720458/91‑1 (MQ=255)
                                                                                aaGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTAt        >  1:1491488/1‑91 (MQ=255)
                                                                                 aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc       <  1:1383737/91‑1 (MQ=255)
                                                                                 aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc       >  1:1648554/1‑91 (MQ=255)
                                                                                 aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc       >  1:2243492/1‑91 (MQ=255)
                                                                                 aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc       <  1:2518043/91‑1 (MQ=255)
                                                                                 aGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc       >  1:3378370/1‑91 (MQ=255)
                                                                                   gCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa     <  1:1125879/91‑1 (MQ=255)
                                                                                   gCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa     <  1:609991/91‑1 (MQ=255)
                                                                                   gCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa     <  1:609259/91‑1 (MQ=255)
                                                                                   gCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa     <  1:608942/91‑1 (MQ=255)
                                                                                     ttttCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaaaa   <  1:1630739/91‑1 (MQ=255)
                                                                                     ttttCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaaaa   >  1:3395211/1‑91 (MQ=255)
                                                                                     ttttCATAGCATTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaaaaa  <  1:47406/91‑1 (MQ=255)
                                                                                     |                                                                                           
TTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAAAA  >  USA300TCH1516_ALE/724844‑725020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.