| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 724910 | 63 (0.640) | 13 (0.150) | 5/140 | NT | 17.6% | intergenic (+30/‑204) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK |
| ? | USA300TCH1516_ALE | = 724929 | 67 (0.780) | intergenic (+49/‑185) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK | |||||
Only 100 of 118 total aligned reads displayed.
GTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAT > USA300TCH1516_ALE/724821‑725000 | gTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAg > 1:3396197/1‑91 (MQ=255)gTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAg > 1:2666604/1‑91 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg < 1:1789128/91‑1 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg < 1:1323534/91‑1 (MQ=255) tAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAgg < 1:1981853/91‑1 (MQ=255) aGCAATTATTGGTGCACCGTCTTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACCACTTATTGCTATGAAAGGc > 1:3743429/1‑91 (MQ=255) aGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGc > 1:463672/1‑91 (MQ=255) aGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGc > 1:463725/1‑91 (MQ=255) aaTTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACt < 1:1207005/91‑1 (MQ=255) aaTTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACt < 1:3073630/91‑1 (MQ=255) ttattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACttt > 1:886419/1‑91 (MQ=255) ttattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACttt > 1:2724399/1‑91 (MQ=255) ttattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACttt > 1:652813/1‑91 (MQ=255) ttattGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACttt > 1:652690/1‑91 (MQ=255) attGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTttat > 1:2372433/1‑91 (MQ=255) attGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTttat > 1:2740930/1‑91 (MQ=255) ggTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTtattat < 1:106573/91‑1 (MQ=255) ggTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTtattat < 1:106616/91‑1 (MQ=255) tGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATaa > 1:2742339/1‑91 (MQ=255) gCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAg > 1:3545742/1‑91 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:1954299‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:3167459‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:1464021‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:922001‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:776812‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgc < 1:3167877‑M1/91‑19 (MQ=255) aCCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGc < 1:2875769/91‑1 (MQ=255) tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttca < 1:724312‑M1/91‑25 (MQ=255) tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttca < 1:1623105‑M2/91‑6 (MQ=255) ttCTTATATTTAATGTACAAAACGAAAAAGGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttcat < 1:3326326‑M1/91‑26 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttcata < 1:776500‑M1/91‑27 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttcata < 1:776498‑M1/91‑27 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata < 1:3690182‑M2/91‑8 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata < 1:3690197‑M2/91‑8 (MQ=255) tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata < 1:2879311‑M2/91‑8 (MQ=255) cTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatag > 1:3613387‑M2/1‑83 (MQ=255) ttATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagc < 1:3901956‑M2/91‑10 (MQ=255) ttATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagc < 1:4020497‑M2/91‑10 (MQ=255) tttAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt > 1:1957591/1‑91 (MQ=255) tttAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttt > 1:3571574/1‑91 (MQ=255) tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttttt > 1:2543572/1‑91 (MQ=255) tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCAtttttt < 1:1985986/91‑1 (MQ=255) tGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAagccttataataaagtgcctttcatagcaataagttgt < 1:4027858‑M1/91‑39 (MQ=255) aCAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTaa < 1:3124643/91‑1 (MQ=255) aaaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATg > 1:3264046/1‑91 (MQ=255) aaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGa < 1:2192087/91‑1 (MQ=255) aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAAagag > 1:3264387/1‑91 (MQ=255) aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAg > 1:909887/1‑91 (MQ=255) aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAg < 1:2780384/91‑1 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc > 1:1774146/1‑91 (MQ=255) aCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGc < 1:2311000/91‑1 (MQ=255) gAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCa < 1:2125157/91‑1 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt < 1:3425806/91‑1 (MQ=255) aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTAAATAATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACt > 1:1664465/1‑91 (MQ=255) aTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCaa < 1:1767731/91‑1 (MQ=255) tGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAg > 1:540843/1‑91 (MQ=255) cttataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAg < 1:1152985/89‑1 (MQ=255) tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAc > 1:853064/1‑91 (MQ=255) taGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATGAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACta > 1:3285715/1‑91 (MQ=255) aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCTACTCAAGACtat < 1:3176350/91‑1 (MQ=255) aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat < 1:3641122/91‑1 (MQ=255) aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtat < 1:4030197/91‑1 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt > 1:3480965/1‑91 (MQ=255) gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatt < 1:1493966/91‑1 (MQ=255) tCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACtatttat < 1:1551594/91‑1 (MQ=255) aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt > 1:312713/1‑91 (MQ=255) aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt > 1:2938730/1‑91 (MQ=255) tGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTAttttt > 1:1149148/1‑91 (MQ=255) acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa > 1:1133732/1‑91 (MQ=255) acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtaca < 1:4027858‑M2/91‑54 (MQ=255) aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa > 1:1636283/1‑91 (MQ=255) aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa > 1:3317138/1‑91 (MQ=255) aCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataat > 1:1977302/1‑91 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 1:2627839/91‑1 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg > 1:2724080/1‑91 (MQ=255) cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg < 1:438028/91‑1 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc > 1:1268323/1‑91 (MQ=255) aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc > 1:946115/1‑91 (MQ=255) gCTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataa < 1:4020497‑M1/91‑83 (MQ=255) gCTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataa < 1:3901956‑M1/91‑83 (MQ=255) cTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataag > 1:3613387‑M1/1‑8 (MQ=255) cTATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataag < 1:472288‑M1/91‑84 (MQ=255) cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt > 1:1053634/1‑91 (MQ=255) tATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga < 1:3690197‑M1/91‑85 (MQ=255) tATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga < 1:2879311‑M1/91‑85 (MQ=255) tATGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga > 1:3105242‑M1/1‑7 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga < 1:776498‑M2/91‑66 (MQ=255) tATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataaga < 1:776500‑M2/91‑66 (MQ=255) aTGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaa > 1:80037‑M1/1‑6 (MQ=255) aTGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacctttttcgttttgtacattaaatataagaa < 1:3326326‑M2/91‑67 (MQ=255) aTGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTaa > 1:1863961/1‑91 (MQ=255) tGAAAagccttataataaagtgcctttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa < 1:1623105‑M1/91‑87 (MQ=255) tGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa < 1:724312‑M2/91‑68 (MQ=255) tGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaa < 1:1177974‑M2/91‑68 (MQ=255) aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt < 1:440266/91‑1 (MQ=255) aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt < 1:3449702/91‑1 (MQ=255) aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt < 1:441674/91‑1 (MQ=255) aaaGGCACTTTATTATAAGGCTTTTCATAGCATTTTTAATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt > 1:3490389/1‑91 (MQ=255) aaaGGCACTTTATTAGAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGAATATTTATTTTTTCAATAATGAACCATTAAGtt > 1:3529071/1‑91 (MQ=255) aGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAt < 1:2001590/91‑1 (MQ=255) | GTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTAT > USA300TCH1516_ALE/724821‑725000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |