| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 744697 | 92 (0.940) | 8 (0.090) | 6/152 | NT | 7.5% | coding (1838/1980 nt) | melR_1 | Melibiose operon regulatory protein |
| ? | USA300TCH1516_ALE | = 744717 | 109 (1.170) | coding (1858/1980 nt) | melR_1 | Melibiose operon regulatory protein | |||||
AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/744604‑744697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTT < USA300TCH1516_ALE/744717‑744629 AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 1:1392180/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 1:2249980/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 1:2109667/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 1:2109854/91‑1 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:1247771/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:2400636/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:2398139/1‑91 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:795087/1‑91 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT < 1:3896853/91‑1 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:3199798/1‑91 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:3199480/1‑91 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:2445340/1‑91 TTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG < 1:2931654/91‑1 AACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTC < 1:2890775/91‑1 AACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTC < 1:1110737/91‑1 ACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCG < 1:1050820/91‑1 CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGC < 1:1350328/91‑1 CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGC < 1:3336672/91‑1 CAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCC < 1:2500419/91‑1 CGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATA < 1:397161/91‑1 GTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAA < 1:1064278/91‑1 ATTGTCTCGCTCTCTATCACTTGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT < 1:406074/91‑1 ATTGTCTCGCTCTCTATCACTTGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT < 1:406109/91‑1 ATTGTCTCGCTCTCTATCACTTGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT < 1:406176/91‑1 ATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT > 1:1612587/1‑91 ATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT > 1:1162021/1‑91 TTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTT < 1:1203614/91‑1 TGTCTCGCTCTCTATCACTCACCAATCATAAATAACAAGACAATAATAATTCTCTATATAAAAAATAGAATAATAACTGTTTTCGTATTTT < 1:1323296/91‑1 AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/744604‑744697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTT < USA300TCH1516_ALE/744717‑744629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |