| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 758250 = | 105 (1.070) | 5 (0.050) | 5/148 | NT | 5.6% | coding (1526/1632 nt) | cydD | ATP‑binding/permease protein CydD |
| ? | USA300TCH1516_ALE | 758282 = | 70 (0.770) | coding (1558/1632 nt) | cydD | ATP‑binding/permease protein CydD | |||||
CCATTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/758343‑758250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAA > USA300TCH1516_ALE/758282‑758370 CCATTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTG > 1:1403946/1‑91CCATTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTG < 1:2476614/91‑1 CATTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTGT < 1:95659/91‑1 TTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTGTAT < 1:2492763/91‑1 CTATATACAAGCGTCGTTGTAAATGGCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAG > 1:1738769/1‑91 ATATACAAGCGTCGTTGTAAATGGCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAA > 1:1368141/1‑91 TATACAAGCGTCGTTGTAAATGGCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAA > 1:482478/1‑91 TACAAGCGTCGTTGTAAATGGCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAAT > 1:157821/1‑91 CGTCGTTGTAAATGGCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGAT > 1:3777686/1‑91 GCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACA > 1:2717109/1‑91 GCGAATTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACA > 1:2717164/1‑91 TTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACT < 1:1247157/91‑1 TTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACT < 1:411282/91‑1 TGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTA < 1:2781289/91‑1 TGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCACTAAATATAACAGAAAATGGTGATGACTTACGAAAACACGACTA > 1:4144059/1‑91 ATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAA < 1:2485681/91‑1 CCATTTTCTGTTATATTTACTGAAATATTGCGATCATCAGCAATCAGTCTTCCATTTTCTATATACAAGCGTCGTTGTAAATGGCGAATTGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/758343‑758250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAA > USA300TCH1516_ALE/758282‑758370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |