BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	758250 =	105 (1.070)	5 (0.050)	5/148	NT	5.6%	coding (1526/1632 nt)	cydD	ATP‑binding/permease protein CydD
*	?	USA300TCH1516_ALE	758282 =	70 (0.770)	5 (0.050)	5/148	NT	5.6%	coding (1558/1632 nt)	cydD	ATP‑binding/permease protein CydD

Only 100 of 121 total aligned reads displayed.

GTTTAGATATTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAA  >  USA300TCH1516_ALE/758160‑758340

gTTTAGATATTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGataa                                                                                            >  1:348038/1‑91 (MQ=255)

    tagtcgtgttttcgtaagtcatcaccattttctgttatatttagtgaaatattgcgatcatcagcaatcagtcttccattttctatATACa                                                                                        >  1:4144059‑M1/87‑91 (MQ=255)

    tagtcgtgttttcataagtcatcaccattttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACa                                                                                        <  1:2781289‑M1/5‑1 (MQ=255)

     gATATTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACaa                                                                                       <  1:2375280/91‑1 (MQ=255)

     agtcgtgttttcataagtcatcaccattttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACaa                                                                                       <  1:1247157‑M1/6‑1 (MQ=255)

     agtcgtgttttcataagtcatcaccattttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACaa                                                                                       <  1:411282‑M1/6‑1 (MQ=255)

      atatTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAAt                                                                                      <  1:1739433/91‑1 (MQ=255)

       tatTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAAtt                                                                                     >  1:880198/1‑91 (MQ=255)

       tatTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAAtt                                                                                     <  1:4092487/91‑1 (MQ=255)

       tatTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAAtt                                                                                     <  1:393162/91‑1 (MQ=255)

         ttCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCg                                                                                   <  1:2142733/91‑1 (MQ=255)

         ttCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAACTCg                                                                                   >  1:3343974/1‑91 (MQ=255)

          tgttttcataagtcatcaccattttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGc                                                                                  >  1:2717109‑M1/81‑91 (MQ=255)

          tgttttcataagtcatcaccattttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGc                                                                                  >  1:2717164‑M1/81‑91 (MQ=255)

          tCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGc                                                                                  <  1:2691913/91‑1 (MQ=255)

           cAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGcc                                                                                 >  1:1948363/1‑91 (MQ=255)

           cAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGcc                                                                                 >  1:673109/1‑91 (MQ=255)

             aaCAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAt                                                                               >  1:732514/1‑91 (MQ=255)

              aCAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAtt                                                                              >  1:3822430/1‑91 (MQ=255)

              aCAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAtt                                                                              >  1:3822782/1‑91 (MQ=255)

               cAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAttt                                                                             >  1:2471291/1‑91 (MQ=255)

               cAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAttt                                                                             >  1:1213379/1‑91 (MQ=255)

               cAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAttt                                                                             <  1:405903/91‑1 (MQ=255)

               cAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCAttt                                                                             >  1:3244921/1‑91 (MQ=255)

                  aaCACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACa                                                                          <  1:2254461/91‑1 (MQ=255)

                  aaCACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACa                                                                          >  1:439408/1‑91 (MQ=255)

                   acacATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACaa                                                                         >  1:4012357/1‑91 (MQ=255)

                   acacATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACaa                                                                         >  1:1445503/1‑91 (MQ=255)

                    cacaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAac                                                                        <  1:2007473/91‑1 (MQ=255)

                    cacaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAac                                                                        <  1:561049/91‑1 (MQ=255)

                    cacaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAac                                                                        <  1:3642506/91‑1 (MQ=255)

                    cacaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAac                                                                        <  1:3642655/91‑1 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTGAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       <  1:3555756/91‑1 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       <  1:367996/91‑1 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       >  1:4125300/1‑91 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       >  1:73766/1‑91 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       <  1:1981097/91‑1 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       <  1:1980140/91‑1 (MQ=255)

                     acaTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacg                                                                       <  1:1980126/91‑1 (MQ=255)

                      caTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacga                                                                      <  1:3091228/91‑1 (MQ=255)

                      caTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacga                                                                      <  1:3092233/91‑1 (MQ=255)

                      caTGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacga                                                                      >  1:2521977/1‑91 (MQ=255)

                        tGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAacgacg                                                                    <  1:2802124/91‑1 (MQ=255)

                         gATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGc                                                                   >  1:1315888/1‑91 (MQ=255)

                         gATTCAGAACGTTCTGTTTCAACAGTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGc                                                                   <  1:150799/91‑1 (MQ=255)

                            tCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTg                                                                <  1:1583984/91‑1 (MQ=255)

                              attttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGta                                                              >  1:157821‑M1/61‑91 (MQ=255)

                               gAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAAAGATAATACAATTCGCCATTTACAACGACGCTTGtat                                                             <  1:3481525/91‑1 (MQ=255)

                                tttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGtata                                                            >  1:482478‑M1/59‑91 (MQ=255)

                                 ttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGtatat                                                           >  1:1368141‑M1/58‑91 (MQ=255)

                                 aCGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatat                                                           <  1:2406437/91‑1 (MQ=255)

                                  cGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatata                                                          >  1:2624213/1‑91 (MQ=255)

                                  cGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatata                                                          <  1:3327363/91‑1 (MQ=255)

                                   gTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAg                                                         >  1:1176645/1‑91 (MQ=255)

                                   gTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAg                                                         <  1:711088/91‑1 (MQ=255)

                                      cTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaa                                                      <  1:2696250/91‑1 (MQ=255)

                                       tGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaaa                                                     >  1:2934762/1‑91 (MQ=255)

                                       tGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaaa                                                     <  1:2229106/91‑1 (MQ=255)

                                        gTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAAt                                                    <  1:1370276/91‑1 (MQ=255)

                                         tttCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATg                                                   >  1:1644423/1‑91 (MQ=255)

                                          ttCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATgg                                                  <  1:1372570/91‑1 (MQ=255)

                                           tCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGa                                                 <  1:1175974/91‑1 (MQ=255)

                                           tCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGa                                                 >  1:1251319/1‑91 (MQ=255)

                                            cAAAATTTTAAAGATACAACGATGATTGTAAATGCACATAGAGATACTACCATTCGACATTTACAACGACGCTTGTATATAGAAAATGGaa                                                <  1:186899/91‑1 (MQ=255)

                                               cATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGAc                                             <  1:462235/91‑1 (MQ=255)

                                                   ttAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGAt                                         >  1:1835536/1‑91 (MQ=255)

                                                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                      >  1:506819/1‑91 (MQ=255)

                                                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                      >  1:2913795/1‑91 (MQ=255)

                                                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                      >  1:2764680/1‑91 (MQ=255)

                                                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                      >  1:2211073/1‑91 (MQ=255)

                                                       aGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCt                                     >  1:1803767/1‑91 (MQ=255)

                                                         aTACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGcgat                                   <  1:2519133/91‑4 (MQ=255)

                                                            cAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCtgatga                                >  1:610462/1‑91 (MQ=255)

                                                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                              >  1:2258749/1‑91 (MQ=255)

                                                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                              >  1:3083314/1‑91 (MQ=255)

                                                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                              <  1:2100472/91‑1 (MQ=255)

                                                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                              >  1:2160390/1‑91 (MQ=255)

                                                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                              <  1:403273/91‑1 (MQ=255)

                                                                gatgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGc                            >  1:2972304/1‑91 (MQ=255)

                                                                gatgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGc                            <  1:1480127/91‑1 (MQ=255)

                                                                  tgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCaa                          <  1:2216753/91‑1 (MQ=255)

                                                                  tgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCaa                          >  1:651486/1‑91 (MQ=255)

                                                                    atTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAata                        >  1:3031794/1‑91 (MQ=255)

                                                                     ttGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAatat                       >  1:2739936/1‑91 (MQ=255)

                                                                     ttGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAatat                       <  1:1563431/91‑1 (MQ=255)

                                                                     ttGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAatat                       <  1:1561997/91‑1 (MQ=255)

                                                                       gTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATAttt                     >  1:3477054/1‑91 (MQ=255)

                                                                        tCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTc                    >  1:2519335/1‑91 (MQ=255)

                                                                        tCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTc                    <  1:2994053/91‑1 (MQ=255)

                                                                         cATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCa                   >  1:1463667/1‑91 (MQ=255)

                                                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTTTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                  <  1:3295938/91‑1 (MQ=255)

                                                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                  <  1:2454416/91‑1 (MQ=255)

                                                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                  <  1:3908805/91‑1 (MQ=255)

                                                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                  <  1:1444721/91‑1 (MQ=255)

                                                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                  <  1:1825211/91‑1 (MQ=255)

                                                                           ttGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGt                 <  1:2108425/91‑1 (MQ=255)

                                                                             gCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTaa               >  1:2774418/1‑91 (MQ=255)

                                                                                 aTAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAatat           >  1:3660028/1‑91 (MQ=255)

                                                                                     agaTAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACa       <  1:1320427/91‑1 (MQ=255)

                                                                                          ATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGaaaa  <  1:2492763‑M1/91‑1 (MQ=255)

GTTTAGATATTCAAACAGAACACATGATTCAGAACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAA  >  USA300TCH1516_ALE/758160‑758340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.