BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	758250 =	105 (1.070)	5 (0.050)	5/148	NT	5.6%	coding (1526/1632 nt)	cydD	ATP‑binding/permease protein CydD
*	?	USA300TCH1516_ALE	758282 =	70 (0.770)	5 (0.050)	5/148	NT	5.6%	coding (1558/1632 nt)	cydD	ATP‑binding/permease protein CydD

Only 100 of 105 total aligned reads displayed.

AACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAATT  >  USA300TCH1516_ALE/758192‑758372

tttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGtata                                                                                            >  1:482478‑M1/59‑91 (MQ=255)

 ttctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGtatat                                                                                           >  1:1368141‑M1/58‑91 (MQ=255)

 aCGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatat                                                                                           <  1:2406437/91‑1 (MQ=255)

 aCGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatat                                                                                           <  1:3977193/91‑1 (MQ=255)

  cGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatata                                                                                          >  1:2740335/1‑91 (MQ=255)

  cGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatata                                                                                          >  1:2624213/1‑91 (MQ=255)

  cGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGtatata                                                                                          <  1:3327363/91‑1 (MQ=255)

   gTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAg                                                                                         >  1:1176645/1‑91 (MQ=255)

   gTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAg                                                                                         <  1:711088/91‑1 (MQ=255)

   ctgttatatttactgaaatattgcgatcatcagcaatcagtcttccattttctatATACAATTCGCCATTTACAACGACGCTTGTATATAg                                                                                         >  1:1738769‑M1/56‑91 (MQ=255)

      cTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaa                                                                                      <  1:2696250/91‑1 (MQ=255)

       tGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaaa                                                                                     >  1:2934625/1‑91 (MQ=255)

       tGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaaa                                                                                     >  1:2934762/1‑91 (MQ=255)

       tGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGaaaa                                                                                     <  1:2229106/91‑1 (MQ=255)

        gTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAAt                                                                                    <  1:1370276/91‑1 (MQ=255)

         tttCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATg                                                                                   >  1:1644423/1‑91 (MQ=255)

          ttCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATgg                                                                                  <  1:1372570/91‑1 (MQ=255)

           tCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGa                                                                                 <  1:1175974/91‑1 (MQ=255)

           tCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGa                                                                                 >  1:1251319/1‑91 (MQ=255)

            cAAAATTTTAAAGATACAACGATGATTGTAAATGCACATAGAGATACTACCATTCGACATTTACAACGACGCTTGTATATAGAAAATGGaa                                                                                <  1:186899/91‑1 (MQ=255)

             aaCATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAg                                                                               >  1:3045959/1‑91 (MQ=255)

               cATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGAc                                                                             <  1:462235/91‑1 (MQ=255)

                   ttAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGAt                                                                         >  1:1835536/1‑91 (MQ=255)

                   ttAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGAt                                                                         >  1:1835553/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:2211073/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:506819/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:2209242/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:2764680/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:1300625/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:2913795/1‑91 (MQ=255)

                      aaGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGATTGTATATAGAAAATGGAAGACTGATTGc                                                                      >  1:3319300/1‑91 (MQ=255)

                       aGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCt                                                                     >  1:1803767/1‑91 (MQ=255)

                         aTACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGcgat                                                                   <  1:2519133/91‑4 (MQ=255)

                            cAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCtgatga                                                                >  1:610462/1‑91 (MQ=255)

                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                                                              >  1:3083314/1‑91 (MQ=255)

                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                                                              <  1:2100472/91‑1 (MQ=255)

                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                                                              >  1:2160390/1‑91 (MQ=255)

                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                                                              <  1:403273/91‑1 (MQ=255)

                              aCGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATc                                                              >  1:2258749/1‑91 (MQ=255)

                                gatgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGc                                                            <  1:1480127/91‑1 (MQ=255)

                                gatgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGc                                                            >  1:2972304/1‑91 (MQ=255)

                                  tgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCaa                                                          >  1:651486/1‑91 (MQ=255)

                                  tgatTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCaa                                                          <  1:2216753/91‑1 (MQ=255)

                                    atTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAata                                                        >  1:3031794/1‑91 (MQ=255)

                                     ttGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAatat                                                       <  1:1563431/91‑1 (MQ=255)

                                     ttGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAatat                                                       <  1:1561997/91‑1 (MQ=255)

                                       gTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATAttt                                                     >  1:3477054/1‑91 (MQ=255)

                                        tCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTc                                                    <  1:2994053/91‑1 (MQ=255)

                                        tCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTc                                                    >  1:2519335/1‑91 (MQ=255)

                                         cATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCa                                                   >  1:1463667/1‑91 (MQ=255)

                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTTTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                                                  <  1:3295938/91‑1 (MQ=255)

                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                                                  <  1:1444721/91‑1 (MQ=255)

                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                                                  <  1:2454416/91‑1 (MQ=255)

                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                                                  <  1:3908805/91‑1 (MQ=255)

                                          aTTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAg                                                  <  1:1825211/91‑1 (MQ=255)

                                           ttGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGt                                                 <  1:2108425/91‑1 (MQ=255)

                                             gCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTaa                                               >  1:2774418/1‑91 (MQ=255)

                                                     agaTAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACa                                       <  1:1320427/91‑1 (MQ=255)

                                                      ctatatacaagcgtcgttgtaaatggcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAg                                      >  1:1738769‑M2/37‑91 (MQ=255)

                                                        atatacaagcgtcgttgtaaatggcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGaa                                    >  1:1368141‑M2/35‑91 (MQ=255)

                                                         tatacaagcgtcgttgtaaatggcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGaaa                                   >  1:482478‑M2/34‑91 (MQ=255)

                                                         aataCAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGaaa                                   >  1:503301/1‑91 (MQ=255)

                                                          ATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGaaaa                                  <  1:2492763‑M1/91‑1 (MQ=255)

                                                            ACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATg                                <  1:95659‑M1/91‑1 (MQ=255)

                                                             CAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATgg                               >  1:1403946‑M1/1‑91 (MQ=255)

                                                             CAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATgg                               <  1:2476614‑M1/91‑1 (MQ=255)

                                                                ttCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtga                            <  1:2599275/91‑1 (MQ=255)

                                                                 tCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtgat                           >  1:1975774/1‑91 (MQ=255)

                                                                 tCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtgat                           >  1:1976603/1‑91 (MQ=255)

                                                                 tCGCCATTTACAACGACGCGTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtgat                           >  1:1975788/1‑91 (MQ=255)

                                                                 cgtcgttgtaaatggcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtgat                           >  1:3777686‑M2/26‑91 (MQ=255)

                                                                  cGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGtgatg                          <  1:1745201/91‑1 (MQ=255)

                                                                  cGCCATTTACAACGACGCTTGTATATAGAAAATGGAACACTGATTGCTGATCATCGCAATATTTCTGTAAATATAACAGAAAATGCtgatg                          >  1:3858022/1‑91 (MQ=255)

                                                                     cATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACt                       >  1:4085523/1‑91 (MQ=255)

                                                                      aTTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACtt                      >  1:1662912/1‑91 (MQ=255)

                                                                       tttACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTa                     <  1:1372705/91‑1 (MQ=255)

                                                                        ttACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTAt                    <  1:395342/91‑1 (MQ=255)

                                                                        ttACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTAt                    <  1:395238/91‑1 (MQ=255)

                                                                         tACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATg                   <  1:2921748/91‑1 (MQ=255)

                                                                         tACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATg                   <  1:1361770/91‑1 (MQ=255)

                                                                         tACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTAATg                   >  1:3265025/1‑91 (MQ=255)

                                                                            aaCGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGaaa                >  1:2373571/1‑91 (MQ=255)

                                                                             acgacgCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGGAAATGGTGATGACTTATGaaaa               >  1:712233/1‑91 (MQ=255)

                                                                             acgacgCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGaaaa               >  1:2350704/1‑91 (MQ=255)

                                                                              cgacgCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAac              >  1:1297524/1‑91 (MQ=255)

                                                                               gcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAaca             >  1:2717164‑M2/12‑91 (MQ=255)

                                                                               gcgaattgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAaca             >  1:2717109‑M2/12‑91 (MQ=255)

                                                                                acgCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAacac            >  1:1576974/1‑91 (MQ=255)

                                                                                  gCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATGTTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGa          <  1:3285531/91‑1 (MQ=255)

                                                                                  gCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATGTTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGa          <  1:3285515/91‑1 (MQ=255)

                                                                                   cTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGAc         <  1:228858/91‑1 (MQ=255)

                                                                                    ttgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACt        <  1:1247157‑M2/85‑1 (MQ=255)

                                                                                    ttgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACt        <  1:411282‑M2/85‑1 (MQ=255)

                                                                                     tgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTa       <  1:2781289‑M2/86‑1 (MQ=255)

                                                                                     tgtatATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCACTAAATATAACAGAAAATGGTGATGACTTACGAAAACACGACTa       >  1:4144059‑M2/6‑91 (MQ=255)

                                                                                        atATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTaaaa    <  1:2485681‑M2/89‑1 (MQ=255)

                                                                                          ataGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAAtt  <  1:1690940/91‑1 (MQ=255)

                                                                                          ataGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAAtt  <  1:2018099/91‑1 (MQ=255)

                                                                                          ataGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAAtt  <  1:2014361/91‑1 (MQ=255)

                                                                                          ataGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAAtt  >  1:1981428/1‑91 (MQ=255)

AACGTTCTGTTTCAACATTTTAAAGATACAACGATGATTGTCATTGCACATAGAGATAATACAATTCGCCATTTACAACGACGCTTGTATATAGAAAATGGAAGACTGATTGCTGATGATCGCAATATTTCAGTAAATATAACAGAAAATGGTGATGACTTATGAAAACACGACTAAAATT  >  USA300TCH1516_ALE/758192‑758372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.