| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 761262 | 99 (1.010) | 8 (0.090) | 6/148 | NT | 7.8% | coding (440/927 nt) | yciC_2 | Putative metal chaperone YciC |
| ? | USA300TCH1516_ALE | = 761280 | 98 (1.080) | coding (458/927 nt) | yciC_2 | Putative metal chaperone YciC | |||||
GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761167‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACA < 1:1622722/91‑1 CAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGCTGCGACTCGATTTTTAGAACGTGATCACTATACCGAAAATACAG > 1:3290134/1‑91 CAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAG > 1:3090766/1‑91 CAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAG < 1:2923436/91‑1 AAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGT < 1:3832394/91‑1 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT > 1:2998846/1‑91 AATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTT > 1:2284345/1‑91 ATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTT < 1:1598706/91‑1 AAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACATCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCA < 1:60100/91‑1 GCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCG < 1:3178959/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 1:275820/91‑1 GATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAA < 1:94310/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 1:258896/91‑1 ATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAAC < 1:3419097/91‑1 ATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTGT < 1:1813050/91‑1 GATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTG < 1:892859/91‑1 AGTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAA < 1:2257974/91‑1 GTTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAAT > 1:1605470/1‑91 TTTCAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACTCCATAAATAATC < 1:3185280/91‑1 CAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC > 1:1386628/1‑91 GCAAATCGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/761167‑761262‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttcAACTGATCTTCCATCAGCGAAACTGTATTTTCGGTATATTGATGACGTTCTAAAAATCGAGTCGCATCTAATACACCATAAATAATCGGC < USA300TCH1516_ALE/761280‑761191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |