BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 761262	99 (1.010)	8 (0.090)	6/148	NT	7.8%	coding (440/927 nt)	yciC_2	Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 761280	98 (1.080)	8 (0.090)	6/148	NT	7.8%	coding (458/927 nt)	yciC_2	Putative metal chaperone YciC

Only 100 of 118 total aligned reads displayed.

GCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGATT  >  USA300TCH1516_ALE/761191‑761368

gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                                         >  1:1386628‑M2/1‑90 (MQ=255)

   gATTATTTATGGAGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaa                                                                                      <  1:3185280‑M2/91‑5 (MQ=255)

    attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaac                                                                                     >  1:1605470‑M2/1‑86 (MQ=255)

     ttatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                                    <  1:2257974‑M2/91‑7 (MQ=255)

       atttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGCAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTaa                                                                                  >  1:3127907/1‑91 (MQ=255)

        tttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAg                                                                                 <  1:3078841/91‑1 (MQ=255)

         ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                                <  1:705087/91‑1 (MQ=255)

          tatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTg                                                                               <  1:2035861/91‑1 (MQ=255)

          tatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTg                                                                               <  1:2035795/91‑1 (MQ=255)

           atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                                              >  1:131224/1‑91 (MQ=255)

           atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                                              <  1:1476888/91‑1 (MQ=255)

            tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                                             >  1:3528306/1‑91 (MQ=255)

            tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                                             <  1:1570255/91‑1 (MQ=255)

              gtgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                                           <  1:2267710/91‑1 (MQ=255)

              gtgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                                           <  1:738648/91‑1 (MQ=255)

               tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                                          <  1:2424339/91‑1 (MQ=255)

                   ttAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGatta                                                                      >  1:661626/1‑91 (MQ=255)

                    tAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattat                                                                     <  1:4049746/91‑1 (MQ=255)

                     aGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatt                                                                    <  1:2269746/91‑1 (MQ=255)

                       aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGTCATGattattat                                                                  <  1:3201821/91‑1 (MQ=255)

                         gCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGAttattatta                                                                >  1:1581771/1‑91 (MQ=255)

                         gCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCCCTGATGGAAGATCAGTTGAAACTAAGTGACATGAttattatta                                                                >  1:4149930/1‑91 (MQ=255)

                          cGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                                               >  1:2094883/1‑91 (MQ=255)

                           gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                                              <  1:2400472/91‑1 (MQ=255)

                           gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                                              >  1:3192309/1‑91 (MQ=255)

                           gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                                              <  1:2138098/91‑1 (MQ=255)

                            aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                             >  1:950858/1‑91 (MQ=255)

                            aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                             <  1:386568/91‑1 (MQ=255)

                            aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                                             >  1:105701/1‑91 (MQ=255)

                               cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                                          >  1:3011686/1‑91 (MQ=255)

                                   ttttAGAGCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                                      <  1:2083697/91‑1 (MQ=255)

                                   ttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                                      <  1:1287115/91‑1 (MQ=255)

                                    tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGGAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                                     <  1:3924758/91‑1 (MQ=255)

                                       aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                                  >  1:2201081/1‑91 (MQ=255)

                                         aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                                <  1:3040356/91‑1 (MQ=255)

                                         aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                                >  1:176665/1‑91 (MQ=255)

                                         aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                                <  1:3040115/91‑1 (MQ=255)

                                          aCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtata                                               >  1:2839587/1‑91 (MQ=255)

                                             tcatcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACt                                            <  1:2400945/91‑1 (MQ=255)

                                               atcaATATACCGAAAATACAGTTTCGCTGATGGCAGAACAGTTGAACCTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtga                                          >  1:3305322/1‑91 (MQ=255)

                                                 caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatc                                        <  1:892859‑M2/91‑51 (MQ=255)

                                                 caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatg                                        >  1:2799732/1‑91 (MQ=255)

                                                  aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                                       <  1:1291698/91‑1 (MQ=255)

                                                  aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                                       <  1:3924231/91‑1 (MQ=255)

                                                  aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                                       <  1:348262/91‑1 (MQ=255)

                                                    tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACa                                     <  1:195964/91‑1 (MQ=255)

                                                    tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACa                                     <  1:434310/91‑1 (MQ=255)

                                                      taCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATACAATTGATCTTATAACTGATGACAGt                                   >  1:3872768/1‑91 (MQ=255)

                                                       aCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGGAACTAAGTGACATGATTATTATTAATAAAATTGTTCTTATAACTGATGACAGTc                                  <  1:1897859/91‑1 (MQ=255)

                                                       aCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTc                                  <  1:1897944/91‑1 (MQ=255)

                                                        ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                 <  1:1335060/91‑1 (MQ=255)

                                                        ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                 >  1:2203346/1‑91 (MQ=255)

                                                        ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                 >  1:4075278/1‑91 (MQ=255)

                                                        ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                 >  1:751589/1‑91 (MQ=255)

                                                        ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                                 >  1:1265761/1‑91 (MQ=255)

                                                          gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg                               <  1:502405/91‑1 (MQ=255)

                                                          gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg                               <  1:502394/91‑1 (MQ=255)

                                                          gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg                               <  1:2396500/91‑1 (MQ=255)

                                                          gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg                               >  1:1834235/1‑91 (MQ=255)

                                                           aaaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTga                              >  1:3146440/1‑91 (MQ=255)

                                                            aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag                             <  1:3058439/91‑1 (MQ=255)

                                                            aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag                             <  1:3058772/91‑1 (MQ=255)

                                                            aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag                             >  1:3692284/1‑91 (MQ=255)

                                                              aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa                           <  1:3844261/91‑1 (MQ=255)

                                                              aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa                           <  1:3517044/91‑1 (MQ=255)

                                                               tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa                          <  1:3996216/91‑1 (MQ=255)

                                                               tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa                          <  1:848078/91‑1 (MQ=255)

                                                                aCAGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaat                         <  1:1813050‑M2/91‑66 (MQ=255)

                                                                aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa                         <  1:3393972/91‑1 (MQ=255)

                                                                aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa                         <  1:3393955/91‑1 (MQ=255)

                                                                  aGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAtt                       >  1:3417786/1‑91 (MQ=255)

                                                                   gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat                      <  1:3419097‑M2/91‑69 (MQ=255)

                                                                   gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat                      <  1:258896‑M2/91‑69 (MQ=255)

                                                                   gTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTg                      <  1:4104168/91‑1 (MQ=255)

                                                                    tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc                     <  1:275820‑M2/91‑70 (MQ=255)

                                                                    tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc                     <  1:94310‑M2/91‑70 (MQ=255)

                                                                    tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa                     <  1:593493/91‑1 (MQ=255)

                                                                      tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa                   <  1:714734/91‑1 (MQ=255)

                                                                       cGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc                  <  1:3178959‑M2/91‑73 (MQ=255)

                                                                        gCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAg                 >  1:2729231/1‑91 (MQ=255)

                                                                        gCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAg                 >  1:2285566/1‑91 (MQ=255)

                                                                          tGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCa               <  1:2011669/91‑1 (MQ=255)

                                                                          tGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCa               <  1:2628140/91‑1 (MQ=255)

                                                                           gATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCaa              >  1:119772/1‑91 (MQ=255)

                                                                             tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt            <  1:2861991/91‑1 (MQ=255)

                                                                             tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt            <  1:2451114/91‑1 (MQ=255)

                                                                             tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt            <  1:2455351/91‑1 (MQ=255)

                                                                             tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt            >  1:1049374/1‑91 (MQ=255)

                                                                             tGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAAtt            <  1:1606941/91‑1 (MQ=255)

                                                                              ggAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTa           <  1:257160/91‑1 (MQ=255)

                                                                                 aGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGt        <  1:2212064/91‑1 (MQ=255)

                                                                                 aGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGt        <  1:455106/91‑1 (MQ=255)

                                                                                 aGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGt        >  1:3096213/1‑91 (MQ=255)

                                                                                  gATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTa       <  1:3029319/91‑1 (MQ=255)

                                                                                  gATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTa       >  1:956040/1‑91 (MQ=255)

                                                                                  gATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTa       >  1:958541/1‑91 (MQ=255)

                                                                                   aTCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTAt      <  1:1870922/91‑1 (MQ=255)

                                                                                    tCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATg     <  1:1445508/91‑1 (MQ=255)

                                                                                     cAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGa    >  1:1255442/1‑91 (MQ=255)

                                                                                       gTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGAtt  >  1:4138082/1‑91 (MQ=255)

GCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAAGCAATTAGGTATGATT  >  USA300TCH1516_ALE/761191‑761368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.