BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 761262	99 (1.010)	8 (0.090)	6/148	NT	7.8%	coding (440/927 nt)	yciC_2	Putative metal chaperone YciC
*	?	USA300TCH1516_ALE	= 761280	98 (1.080)	8 (0.090)	6/148	NT	7.8%	coding (458/927 nt)	yciC_2	Putative metal chaperone YciC

Only 100 of 128 total aligned reads displayed.

CGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761173‑761352

cGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCg                                                                                           >  1:17903/1‑91 (MQ=255)

  ttAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCt                                                                                         >  1:3109277/1‑91 (MQ=255)

     aTTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGAt                                                                                      <  1:3089056/91‑1 (MQ=255)

     aTTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGAt                                                                                      <  1:2207633/91‑1 (MQ=255)

      tttctttcAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATg                                                                                     <  1:2070264/91‑1 (MQ=255)

       ttCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATgg                                                                                    <  1:2919874/91‑1 (MQ=255)

        tCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGa                                                                                   <  1:3474425/91‑1 (MQ=255)

        tCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGa                                                                                   <  1:1377182/91‑1 (MQ=255)

          tttGTAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAg                                                                                 <  1:3456346/91‑1 (MQ=255)

          tttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAg                                                                                 <  1:2322459/91‑1 (MQ=255)

           ttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGa                                                                                <  1:1534702/91‑1 (MQ=255)

           ttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGa                                                                                <  1:372987/91‑1 (MQ=255)

           ttGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGa                                                                                >  1:645604/1‑91 (MQ=255)

            tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               <  1:2873572/91‑1 (MQ=255)

            tGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGAt                                                                               <  1:3567829/91‑1 (MQ=255)

             gAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATc                                                                              >  1:1105727/1‑91 (MQ=255)

               aaaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAg                                                                            >  1:4025308/1‑91 (MQ=255)

               aaaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAg                                                                            >  1:712964/1‑91 (MQ=255)

               aaaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAg                                                                            >  1:4025223/1‑91 (MQ=255)

               aaaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAg                                                                            >  1:2094865/1‑91 (MQ=255)

               aaaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACATCATCAATATACCGAAAATACAGTTTCaactgatcttccatca                                                                            <  1:60100‑M1/91‑17 (MQ=255)

                aaGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGt                                                                           <  1:1462288/91‑1 (MQ=255)

                  gCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTg                                                                         >  1:1386628‑M2/1‑90 (MQ=255)

                     gATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaa                                                                      <  1:275820‑M1/91‑23 (MQ=255)

                     gATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaa                                                                      <  1:94310‑M1/91‑23 (MQ=255)

                     gATTATTTATGGAGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaa                                                                      <  1:3185280‑M2/91‑5 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaac                                                                     <  1:258896‑M1/91‑24 (MQ=255)

                      attattTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaac                                                                     <  1:3419097‑M1/91‑24 (MQ=255)

                       ttatttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTgaaact                                                                    <  1:2257974‑M2/91‑7 (MQ=255)

                         atttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGCAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTaa                                                                  >  1:3127907/1‑91 (MQ=255)

                           ttatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGt                                                                <  1:705087/91‑1 (MQ=255)

                            tatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTg                                                               <  1:2035861/91‑1 (MQ=255)

                            tatGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTg                                                               <  1:2035795/91‑1 (MQ=255)

                             atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                              >  1:131224/1‑91 (MQ=255)

                             atGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGa                                                              <  1:1476888/91‑1 (MQ=255)

                              tGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGAc                                                             <  1:1570255/91‑1 (MQ=255)

                                gtgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACAt                                                           <  1:2267710/91‑1 (MQ=255)

                                 tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                          <  1:1993189/91‑1 (MQ=255)

                                 tgtATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATg                                                          <  1:2424339/91‑1 (MQ=255)

                                      tAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattat                                                     <  1:4049746/91‑1 (MQ=255)

                                       aGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatt                                                    <  1:2267719/91‑1 (MQ=255)

                                        gATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCaactgatcttccatcagcgaaactgtattttcggtatattg                                                   <  1:892859‑M1/91‑42 (MQ=255)

                                        gATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGattatta                                                   >  1:1804441/1‑91 (MQ=255)

                                         aTGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGTCATGattattat                                                  <  1:3201821/91‑1 (MQ=255)

                                           gCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGAttattatta                                                >  1:1581771/1‑91 (MQ=255)

                                           gCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCCCTGATGGAAGATCAGTTGAAACTAAGTGACATGAttattatta                                                >  1:4149930/1‑91 (MQ=255)

                                            cGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaa                                               >  1:2094883/1‑91 (MQ=255)

                                             gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                              <  1:2400472/91‑1 (MQ=255)

                                             gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                              >  1:3192309/1‑91 (MQ=255)

                                             gACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaat                                              <  1:2138098/91‑1 (MQ=255)

                                              aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             <  1:386568/91‑1 (MQ=255)

                                              aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             >  1:105701/1‑91 (MQ=255)

                                              aCTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATtaata                                             >  1:950858/1‑91 (MQ=255)

                                                 cGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATaaaa                                          >  1:3011686/1‑91 (MQ=255)

                                                     ttttAGAGCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                      <  1:2083697/91‑1 (MQ=255)

                                                     ttttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGa                                      <  1:1287115/91‑1 (MQ=255)

                                                      tttAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGGAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGAt                                     <  1:3924758/91‑1 (MQ=255)

                                                         aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                  >  1:2201081/1‑91 (MQ=255)

                                                         aGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCtt                                  >  1:869877/1‑91 (MQ=255)

                                                           aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                <  1:3040356/91‑1 (MQ=255)

                                                           aaCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtat                                >  1:176665/1‑91 (MQ=255)

                                                            aCGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTtata                               >  1:2839587/1‑91 (MQ=255)

                                                               tcatcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACt                            <  1:2400945/91‑1 (MQ=255)

                                                                 atcaATATACCGAAAATACAGTTTCGCTGATGGCAGAACAGTTGAACCTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtga                          >  1:3305322/1‑91 (MQ=255)

                                                                  tcaATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgat                         >  1:3071693/1‑91 (MQ=255)

                                                                   caATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatg                        >  1:2799732/1‑91 (MQ=255)

                                                                    aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:348262/91‑1 (MQ=255)

                                                                    aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:1291698/91‑1 (MQ=255)

                                                                    aaTATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACtgatga                       <  1:3924231/91‑1 (MQ=255)

                                                                      tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACa                     <  1:434310/91‑1 (MQ=255)

                                                                      tataCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACa                     <  1:434277/91‑1 (MQ=255)

                                                                        taCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATACAATTGATCTTATAACTGATGACAGt                   >  1:3872768/1‑91 (MQ=255)

                                                                         aCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGGAACTAAGTGACATGATTATTATTAATAAAATTGTTCTTATAACTGATGACAGTc                  <  1:1897859/91‑1 (MQ=255)

                                                                         aCCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTc                  <  1:1897944/91‑1 (MQ=255)

                                                                          ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                 <  1:1335060/91‑1 (MQ=255)

                                                                          ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                 >  1:4075278/1‑91 (MQ=255)

                                                                          ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                 >  1:751589/1‑91 (MQ=255)

                                                                          ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                 >  1:1265761/1‑91 (MQ=255)

                                                                          ccGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCt                 >  1:2203346/1‑91 (MQ=255)

                                                                            gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg               <  1:2396500/91‑1 (MQ=255)

                                                                            gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg               >  1:1834235/1‑91 (MQ=255)

                                                                            gAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTg               <  1:502405/91‑1 (MQ=255)

                                                                             aaaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTga              >  1:3146440/1‑91 (MQ=255)

                                                                              aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag             >  1:3692284/1‑91 (MQ=255)

                                                                              aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag             <  1:3058772/91‑1 (MQ=255)

                                                                              aaaTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTgag             <  1:3058439/91‑1 (MQ=255)

                                                                                aTACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaa           <  1:3517044/91‑1 (MQ=255)

                                                                                 tACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaa          <  1:848078/91‑1 (MQ=255)

                                                                                  aCAGTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaat         <  1:1813050‑M2/91‑66 (MQ=255)

                                                                                  aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa         <  1:3395731/91‑1 (MQ=255)

                                                                                  aCAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGaaaa         <  1:3393955/91‑1 (MQ=255)

                                                                                    aGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAAtt       >  1:3417786/1‑91 (MQ=255)

                                                                                     gTTTCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      >  1:1605470‑M1/1‑5 (MQ=255)

                                                                                     gTTTCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataat      <  1:258896‑M2/91‑69 (MQ=255)

                                                                                      tttCaactgatcttccatcagcgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatactccataaataatc     <  1:3185280‑M1/91‑88 (MQ=255)

                                                                                      tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  1:275820‑M2/91‑70 (MQ=255)

                                                                                      tttCGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatc     <  1:94310‑M2/91‑70 (MQ=255)

                                                                                      tttCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGa     <  1:593493/91‑1 (MQ=255)

                                                                                        tCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATa   <  1:714734/91‑1 (MQ=255)

                                                                                         cGCTGATGGAAGATCAGTTgaaactgtattttcggtatattgatgacgttctaaaaatcgagtcgcatctaatacaccataaataatcggc  <  1:3178959‑M2/91‑73 (MQ=255)

CGTTAATTTCTTTGAAAAGCCGATTATTTATGGTGTATTAGATGCGACTCGATTTTTAGAACGTCATCAATATACCGAAAATACAGTTTCGCTGATGGAAGATCAGTTGAAACTAAGTGACATGATTATTATTAATAAAATTGATCTTATAACTGATGACAGTCTTGAGAAAATTGATAA  >  USA300TCH1516_ALE/761173‑761352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.