| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 774819 = | 89 (0.910) | 5 (0.060) | 4/134 | NT | 6.4% | intergenic (+110/‑198) | fruA/nagA | PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase |
| ? | USA300TCH1516_ALE | 774873 = | 72 (0.870) | intergenic (+164/‑144) | fruA/nagA | PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase | |||||
AAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/774921‑774819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGA > USA300TCH1516_ALE/774873‑774959 AAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAG < 1:3994032/91‑1 AAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGA < 1:1121060/91‑1 AGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAA < 1:1494118/91‑1 AGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAA < 1:439523/91‑1 GTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAA > 1:3011208/1‑91 CTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGT > 1:762286/1‑91 TATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG > 1:994727/1‑91 TATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG > 1:1050190/1‑91 TATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG < 1:4084701/91‑1 TATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG > 1:3992526/1‑91 TATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTG > 1:3669442/1‑91 ATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGT > 1:70005/1‑91 TACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTT > 1:1264637/1‑91 ACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTT < 1:1841976/91‑1 ATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTT < 1:3835022/91‑1 ATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGA > 1:40673/1‑91 AAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAAT > 1:2929849/1‑91 AAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAAT > 1:121046/1‑91 CTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGA > 1:3280227/1‑91 TTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACT > 1:2213934/1‑91 GAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAA > 1:3726999/1‑91 GAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAA > 1:3920864/1‑91 AAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACG > 1:2136310/1‑91 AGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGA < 1:2713188/91‑1 GTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAA > 1:281999/1‑91 TTTTTATTTTTAGATAAATGAATGATGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCA < 1:3856750/91‑1 TTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCA < 1:2957094/91‑1 TTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAG > 1:3840511/1‑91 TTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAG < 1:1494761/91‑1 TTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGA < 1:2693546/91‑1 TTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGA > 1:868251/1‑91 AAAGTCTATACATTTGTGGTGTCTATTTCTTCATTCATTTATCTAAAAATAAAAACACTTTCATATCAATTCATAAAAACTGAATTAATAGAAAGTGTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/774921‑774819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGA > USA300TCH1516_ALE/774873‑774959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |