BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	774819 =	89 (0.910)	5 (0.060)	4/134	NT	6.4%	intergenic (+110/‑198)	fruA/nagA	PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase
*	?	USA300TCH1516_ALE	774873 =	72 (0.870)	5 (0.060)	4/134	NT	6.4%	intergenic (+164/‑144)	fruA/nagA	PTS system fructose‑specific EIIABC component/N‑acetylglucosamine‑6‑phosphate deacetylase

Only 100 of 119 total aligned reads displayed.

TTATATATCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATA  >  USA300TCH1516_ALE/774783‑774963

ttATATATCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGtttttat                                                                                            <  1:380358/91‑1 (MQ=255)

   tatatCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGtttttatttt                                                                                         >  1:2123432/1‑91 (MQ=255)

   tatatCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGtttttatttt                                                                                         >  1:2099581/1‑91 (MQ=255)

   tatatCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCCATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGtttttatttt                                                                                         >  1:3300297/1‑91 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     >  1:2175959/1‑91 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     >  1:1109151/1‑91 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     >  1:604729/1‑91 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     >  1:2175805/1‑91 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     <  1:1983225/91‑1 (MQ=255)

       tCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGa                                                                                     >  1:1358474/1‑91 (MQ=255)

        tctatttcttcattcatttatctaaaaaTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGAt                                                                                    >  1:40673‑M1/29‑91 (MQ=255)

        cGTGATAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTCGAt                                                                                    >  1:3267421/1‑91 (MQ=255)

         gtgtTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATa                                                                                   >  1:3652760/1‑91 (MQ=255)

             tAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatg                                                                               <  1:273830/91‑1 (MQ=255)

             tAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatg                                                                               >  1:1253180/1‑91 (MQ=255)

              aaCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatga                                                                              >  1:1098039/1‑91 (MQ=255)

               aCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaa                                                                             <  1:3422557/91‑1 (MQ=255)

               aCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaa                                                                             >  1:2646982/1‑91 (MQ=255)

               aCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaa                                                                             >  1:3173688/1‑91 (MQ=255)

               aCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaa                                                                             >  1:3480500/1‑91 (MQ=255)

               aCGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaa                                                                             >  1:3173789/1‑91 (MQ=255)

                cGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaat                                                                            >  1:3003916/1‑91 (MQ=255)

                cGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAaatgaat                                                                            >  1:3063166/1‑91 (MQ=255)

                  gTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAatgaatga                                                                          <  1:562247/91‑1 (MQ=255)

                  gTAGCGTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAatgaatga                                                                          >  1:1214050/1‑91 (MQ=255)

                       ttATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGaaa                                                                     <  1:1305645/91‑1 (MQ=255)

                       ttATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGaaa                                                                     <  1:1305944/91‑1 (MQ=255)

                        tataCAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAAt                                                                    <  1:4002518/91‑1 (MQ=255)

                        tataCAAAGCTGT‑AAAACACCTTCTATTAATTTAGTTTTTATGAATTGAAAAGGAAAAGGTTTTAATTTTAAAATAAA‑GAAAGAAGAAATa                                                                   >  1:524342/1‑91 (MQ=255)

                         ataCAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATa                                                                   >  1:3384214/1‑91 (MQ=255)

                         ataCAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATa                                                                   >  1:3383662/1‑91 (MQ=255)

                            cAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGac                                                                <  1:4125647/91‑1 (MQ=255)

                              aaGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGacac                                                              <  1:2741784/91‑1 (MQ=255)

                              aaGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGacac                                                              <  1:3442509/91‑1 (MQ=255)

                               aGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGAcacc                                                             <  1:813837/91‑1 (MQ=255)

                                 cTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGAcaccac                                                           <  1:2169498/91‑1 (MQ=255)

                                     AAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAAt                                                       <  1:3835022‑M1/91‑1 (MQ=255)

                                      aaaaacactttcatatcaattcataaaaactgaattaatagaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAAt                                                       >  1:2929849‑M2/54‑91 (MQ=255)

                                      aaaaacactttcatatcaattcataaaaactgaattaatagaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAAt                                                       >  1:121046‑M2/54‑91 (MQ=255)

                                        AACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGta                                                    >  1:1264637‑M1/1‑91 (MQ=255)

                                         ACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGtat                                                   >  1:70005‑M1/1‑91 (MQ=255)

                                          CACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGtata                                                  >  1:3669442‑M1/1‑91 (MQ=255)

                                          CACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGtata                                                  >  1:3992526‑M1/1‑91 (MQ=255)

                                          CACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGtata                                                  <  1:4084701‑M1/91‑1 (MQ=255)

                                          CACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGtata                                                  >  1:1050190‑M1/1‑91 (MQ=255)

                                           ACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAg                                                 >  1:762286‑M1/1‑91 (MQ=255)

                                             ctttcatatcaattcataaaaactgaattaatagaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGa                                                >  1:3280227‑M2/47‑91 (MQ=255)

                                              TTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACt                                              <  1:1494118‑M1/91‑1 (MQ=255)

                                              TTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACt                                              <  1:439523‑M1/91‑1 (MQ=255)

                                               ttcatatcaattcataaaaactgaattaatagaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACt                                              >  1:2213934‑M2/45‑91 (MQ=255)

                                               TCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACtt                                             <  1:1121060‑M1/91‑1 (MQ=255)

                                                CTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACttt                                            <  1:3994032‑M1/91‑1 (MQ=255)

                                                 tATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACtttt                                           >  1:1163938/1‑91 (MQ=255)

                                                  aTTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACttttt                                          <  1:190975/91‑1 (MQ=255)

                                                  aTTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACttttt                                          <  1:473247/91‑1 (MQ=255)

                                                   ttAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACtttttt                                         <  1:579716/91‑1 (MQ=255)

                                                   ttAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACtttttt                                         <  1:2291874/91‑1 (MQ=255)

                                                     aaTTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTaa                                       <  1:360991/91‑1 (MQ=255)

                                                       ttCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAata                                     <  1:382256/91‑1 (MQ=255)

                                                          aGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATAttt                                  >  1:3095435/1‑91 (MQ=255)

                                                           gTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATAtttt                                 <  1:2987951/91‑1 (MQ=255)

                                                           gTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATAtttt                                 >  1:2552921/1‑91 (MQ=255)

                                                           gTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATAtttt                                 >  1:2327917/1‑91 (MQ=255)

                                                           gTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATAtttt                                 >  1:3548441/1‑91 (MQ=255)

                                                            tttttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTg                                <  1:141797/91‑1 (MQ=255)

                                                            tttttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTg                                >  1:2625485/1‑91 (MQ=255)

                                                             ttttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGc                               <  1:3279805/91‑1 (MQ=255)

                                                             ttttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGc                               >  1:1360280/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             <  1:547791/91‑1 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:4055409/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:254038/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:254196/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:4054916/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:4124790/1‑91 (MQ=255)

                                                               ttATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaa                             >  1:1729607/1‑91 (MQ=255)

                                                                tATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaaa                            <  1:1895186/91‑1 (MQ=255)

                                                                 aTGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCaaaa                           >  1:2438106/1‑91 (MQ=255)

                                                                    aaTTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGt                        <  1:1807303/91‑1 (MQ=255)

                                                                      ttG‑ATATGAAAGTGTTTTTATTTTTAGATAAAGGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTa                      <  1:3532135/91‑1 (MQ=255)

                                                                      ttG‑ATATGAAAGTGTTTTTATTTTTAGATAAACGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTa                      <  1:3532634/91‑1 (MQ=255)

                                                                       tG‑ATATGAAAGTGTATTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTAt                     <  1:1357250/91‑1 (MQ=255)

                                                                        g‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATg                    <  1:2688938/91‑1 (MQ=255)

                                                                        g‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATg                    <  1:1706976/91‑1 (MQ=255)

                                                                        g‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATg                    >  1:2667263/1‑91 (MQ=255)

                                                                        g‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATg                    <  1:2501468/91‑1 (MQ=255)

                                                                        g‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATg                    <  1:2501395/91‑1 (MQ=255)

                                                                          atatGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGc                   >  1:2381917/1‑91 (MQ=255)

                                                                          atatGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGc                   <  1:1286922/91‑1 (MQ=255)

                                                                           tatGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGcc                  >  1:718426/1‑91 (MQ=255)

                                                                            atGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCa                 <  1:3077305/91‑1 (MQ=255)

                                                                              gaaagtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCaaa               >  1:3726999‑M2/14‑91 (MQ=255)

                                                                                 agtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGa            <  1:2713188‑M2/81‑1 (MQ=255)

                                                                                  gtgtttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGaa           >  1:281999‑M2/10‑91 (MQ=255)

                                                                                     tttttaTTTTTAGATAAATGAATGATGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCa        <  1:3856750‑M2/85‑1 (MQ=255)

                                                                                     tttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCa        <  1:2957094‑M2/85‑1 (MQ=255)

                                                                                      ttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAg       <  1:1494761‑M2/86‑1 (MQ=255)

                                                                                      ttttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAg       >  1:3840511‑M2/6‑91 (MQ=255)

                                                                                       tttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGa      >  1:868251‑M2/5‑91 (MQ=255)

                                                                                       tttaTTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGa      <  1:2693546‑M2/87‑1 (MQ=255)

                                                                                           tttttaGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGAtata  <  1:1055400/91‑1 (MQ=255)

TTATATATCGTGTTAACGGTAGCTTATACAAAGCTGTAAAAACACTTTCTATTAATTCAGTTTTTATGAATTG‑ATATGAAAGTGTTTTTATTTTTAGATAAATGAATGAAGAAATAGACACCACAAATGTATAGACTTTTTTAATATTTTGCAAAAAGTTATGCCAAACGAAGCAGATATA  >  USA300TCH1516_ALE/774783‑774963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.