| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 781357 = | 93 (0.950) | 6 (0.070) | 5/146 | NT | 6.7% | coding (401/687 nt) | saeR | Response regulator SaeR |
| ? | USA300TCH1516_ALE | 781390 = | 83 (0.930) | coding (368/687 nt) | saeR | Response regulator SaeR | |||||
CATTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/781453‑781357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCT > USA300TCH1516_ALE/781390‑781479 CATTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTT > 1:1187074/1‑91 TTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTG > 1:1048449/1‑91 TTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTG > 1:1659920/1‑91 TTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTG > 1:3303785/1‑91 TTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGA > 1:4111283/1‑91 TAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGAT > 1:1258966/1‑91 TAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGAT < 1:497575/91‑1 TAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGAT < 1:2599815/91‑1 GTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGATGA > 1:1350995/1‑91 TAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGATGATGGTATTTCTTCATTCTTGTAAGTAAAT > 1:779241/1‑91 AAATACCATCATCAACCAGTTGAACAACTGTCGTTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTC > 1:3601456/1‑91 ACCATCATCAACCAGTTGAACAACTGTCGTTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTT > 1:2632416/1‑91 ACCATCATCAACCAGTTGAACAACTGTCGTTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTT > 1:823956/1‑91 CATCAACCAGTTGAACAACTGTCGTTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACT > 1:1804122/1‑91 CCAGTTGAACAACTGTCGTTTGATGATGGTATTTATTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGG > 1:1078852/1‑91 TGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTG > 1:2892836/1‑91 TGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTG > 1:1082340/1‑91 GATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGC > 1:524441/1‑91 ATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCA < 1:869197/91‑1 ATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCA < 1:2921627/91‑1 ATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCA < 1:3089979/91‑1 ATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCA < 1:2295530/91‑1 ATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCA < 1:1325099/91‑1 TGATGGTATTTCTTCCTTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCAC > 1:407012/1‑91 GATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACC > 1:2414718/1‑91 ATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCT < 1:997468/91‑1 ATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCT > 1:2671915/1‑91 ATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCT < 1:139717/91‑1 CATTTAGTCCAAGGGAACTCGTTTTACGTATTAATAATTTACTTACAAGAATGAAGAAATACCATCATCAACCAGTTGAACAACTGTCGTTTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/781453‑781357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCT > USA300TCH1516_ALE/781390‑781479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |