BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	781357 =	93 (0.950)	6 (0.070)	5/146	NT	6.7%	coding (401/687 nt)	saeR	Response regulator SaeR
*	?	USA300TCH1516_ALE	781390 =	83 (0.930)	6 (0.070)	5/146	NT	6.7%	coding (368/687 nt)	saeR	Response regulator SaeR

Only 100 of 135 total aligned reads displayed.

ATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCTA  >  USA300TCH1516_ALE/781300‑781480

 tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                                                           >  1:638973/1‑91 (MQ=255)

 tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                                                           <  1:1272188/91‑1 (MQ=255)

 tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                                                           <  1:1272115/91‑1 (MQ=255)

  aGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATgg                                                                                          <  1:2326307/91‑1 (MQ=255)

   gggACATCGTGACCATTTACAGTCACAACTTTACTTAAGCTAATAAGTGTTAACTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGt                                                                                         <  1:3855493/91‑1 (MQ=255)

   aagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGt                                                                                         >  1:823956‑M1/55‑91 (MQ=255)

   aagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGt                                                                                         >  1:2632416‑M1/55‑91 (MQ=255)

      aCTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAtt                                                                                      >  1:1943281/1‑91 (MQ=255)

      aCTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAtt                                                                                      >  1:1926782/1‑91 (MQ=255)

       gaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAttt                                                                                     >  1:3601456‑M1/51‑91 (MQ=255)

        ttCGTGACCATTTACAGTCACAACTTTACTTATGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                                                    <  1:1186991/91‑1 (MQ=255)

        ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                                                    >  1:3669758/1‑91 (MQ=255)

        ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                                                    <  1:11657/91‑1 (MQ=255)

        ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                                                    >  1:1837552/1‑91 (MQ=255)

        ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                                                    >  1:798993/1‑91 (MQ=255)

         tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                                                   <  1:2224822/91‑1 (MQ=255)

         tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                                                   >  1:1759951/1‑91 (MQ=255)

         tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGCGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                                                   >  1:1358218/1‑91 (MQ=255)

          cGTGACCGTTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                                                  <  1:2084336/91‑1 (MQ=255)

          cGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                                                  <  1:3267210/91‑1 (MQ=255)

          cGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                                                  >  1:3053186/1‑91 (MQ=255)

                  tttACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTg                                                                          <  1:3302643/91‑1 (MQ=255)

                    tACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgta                                                                        >  1:85842/1‑91 (MQ=255)

                    tACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgta                                                                        <  1:2504994/91‑1 (MQ=255)

                     aCAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaa                                                                       <  1:515251/91‑1 (MQ=255)

                     aCAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaa                                                                       >  1:3019748/1‑91 (MQ=255)

                         tCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaactaa                                                                   >  1:3216404/1‑91 (MQ=255)

                           taatttacttacaagaatgaagaaataccatcatcaaccagttgaacaactgtcgtttgatgaTGGTATTTCTTCATTCTTGTAAGTAAat                                                                 >  1:779241‑M2/64‑91 (MQ=255)

                              aCTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAattat                                                              >  1:988759/1‑91 (MQ=255)

                               cTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATACTTGTAAGTAAattatt                                                             <  1:2546714/91‑1 (MQ=255)

                                tttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAAttatta                                                            >  1:1625572/1‑91 (MQ=255)

                                tttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAAttatta                                                            >  1:2571327/1‑91 (MQ=255)

                                 ttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTaa                                                           <  1:285145/91‑1 (MQ=255)

                                 ttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTaa                                                           <  1:4069302/91‑1 (MQ=255)

                                  tACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAAt                                                          <  1:3807040/91‑1 (MQ=255)

                                  tACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAAt                                                          >  1:1676327/1‑91 (MQ=255)

                                   aCTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATa                                                         >  1:858789/1‑91 (MQ=255)

                                    cTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTGAATTATTAATAc                                                        <  1:3173772/91‑1 (MQ=255)

                                    cTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATAc                                                        >  1:1260390/1‑91 (MQ=255)

                                       aaGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTa                                                     <  1:747829/91‑1 (MQ=255)

                                       aaGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTa                                                     >  1:3266245/1‑91 (MQ=255)

                                        aGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTaa                                                    >  1:2242338/1‑91 (MQ=255)

                                            aataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACg                                                <  1:27033/91‑1 (MQ=255)

                                             ataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGa                                               <  1:2622968/91‑1 (MQ=255)

                                               aaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGt                                             >  1:955316/1‑91 (MQ=255)

                                               aaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGt                                             >  1:955330/1‑91 (MQ=255)

                                                aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTCTTTCTTCATTCTTGTAAGTACATTATTAATACGTAAAACGAGtt                                            >  1:1243406/1‑91 (MQ=255)

                                                aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt                                            >  1:349279/1‑91 (MQ=255)

                                                aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt                                            >  1:1638877/1‑91 (MQ=255)

                                                 gtgtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTc                                           <  1:742191/91‑1 (MQ=255)

                                                 aaataccatcatcaaccagttgaacaactgtcgtttgatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTc                                           >  1:3601456‑M2/42‑91 (MQ=255)

                                                  tgtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTcc                                          >  1:609927/1‑91 (MQ=255)

                                                   gtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTccc                                         >  1:2778585/1‑91 (MQ=255)

                                                   gtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTccc                                         >  1:376906/1‑91 (MQ=255)

                                                   gtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTccc                                         >  1:1407523/1‑91 (MQ=255)

                                                    ttAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCt                                        <  1:1626124/91‑1 (MQ=255)

                                                    ttAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCt                                        >  1:97332/1‑91 (MQ=255)

                                                    ttAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCt                                        >  1:99326/1‑91 (MQ=255)

                                                     accatcatcaaccagttgaacaactgtcgtttgatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCtt                                       >  1:2632416‑M2/38‑91 (MQ=255)

                                                       aTTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTgg                                     <  1:1005348/91‑1 (MQ=255)

                                                        ttCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGa                                    >  1:3218344/1‑91 (MQ=255)

                                                         TCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGAc                                   >  1:1350995‑M1/1‑91 (MQ=255)

                                                           ATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTa                                 <  1:497575‑M1/91‑1 (MQ=255)

                                                           ATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTa                                 >  1:1258966‑M1/1‑91 (MQ=255)

                                                            TCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTaa                                >  1:4111283‑M1/1‑91 (MQ=255)

                                                             CAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTaaa                               >  1:1048449‑M1/1‑91 (MQ=255)

                                                             CAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTaaa                               >  1:3303785‑M1/1‑91 (MQ=255)

                                                             CAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTaaa                               >  1:1659920‑M1/1‑91 (MQ=255)

                                                                ccagttgaacaactgtcgtttgatgaTGGTATTTATTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATgg                            >  1:1078852‑M2/27‑91 (MQ=255)

                                                                aCGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATgg                            <  1:2300168/91‑1 (MQ=255)

                                                                aCGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATgg                            <  1:2300089/91‑1 (MQ=255)

                                                                 cGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGt                           >  1:3000118/1‑91 (MQ=255)

                                                                 cGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGAAAAACGAGTTCCCTTGGACTAAATGGt                           >  1:149578/1‑91 (MQ=255)

                                                                  gACAGTTGTACAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGtt                          <  1:3732057/91‑1 (MQ=255)

                                                                     aGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGttttt                       >  1:3803097/1‑91 (MQ=255)

                                                                     aGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGttttt                       >  1:3382898/1‑91 (MQ=255)

                                                                     aGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGttttt                       >  1:421927/1‑91 (MQ=255)

                                                                       ttgttCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTg                     >  1:1406022/1‑91 (MQ=255)

                                                                        tgttCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGa                    >  1:1506488/1‑91 (MQ=255)

                                                                        tgttCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGa                    >  1:1343602/1‑91 (MQ=255)

                                                                         gttCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGAc                   <  1:3984038/91‑1 (MQ=255)

                                                                            caattGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATa                <  1:1095498/87‑1 (MQ=255)

                                                                            cAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATa                <  1:701785/91‑1 (MQ=255)

                                                                            cAACAGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATa                >  1:3277227/1‑91 (MQ=255)

                                                                              aCTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGt              >  1:3470404/1‑91 (MQ=255)

                                                                              aCTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGt              <  1:726617/91‑1 (MQ=255)

                                                                              aCTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGt              <  1:3717779/91‑1 (MQ=255)

                                                                                tGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCa            >  1:2414983/1‑91 (MQ=255)

                                                                                tGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCa            >  1:2033652/1‑91 (MQ=255)

                                                                                    tgatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTg        >  1:2892836‑M2/7‑91 (MQ=255)

                                                                                     gatgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGc       >  1:524441‑M2/6‑91 (MQ=255)

                                                                                      atgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCa      <  1:2295530‑M2/87‑1 (MQ=255)

                                                                                      atgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCa      <  1:869197‑M2/87‑1 (MQ=255)

                                                                                      atgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCa      <  1:1325099‑M2/87‑1 (MQ=255)

                                                                                      atgaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCa      <  1:2921627‑M2/87‑1 (MQ=255)

                                                                                       tgaTGGTATTTCTTCCTTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCAc     >  1:407012‑M2/4‑91 (MQ=255)

                                                                                        gaTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCAcc    >  1:2414718‑M2/3‑91 (MQ=255)

                                                                                         aTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCt   >  1:2671915‑M2/2‑91 (MQ=255)

                                                                                         aTGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCt   <  1:139717‑M2/90‑1 (MQ=255)

                                                                                          tgGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCTa  <  1:2127408/91‑1 (MQ=255)

ATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGACTAAATGGTTTTTTGACATAGTCATCTGCACCTA  >  USA300TCH1516_ALE/781300‑781480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.