New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 781357 =93 (0.950)6 (0.070) 5/146 NT 6.7% coding (401/687 nt) saeR Response regulator SaeR
?USA300TCH1516_ALE 781390 = 83 (0.930)coding (368/687 nt) saeR Response regulator SaeR

Only 100 of 122 total aligned reads displayed.

AAATACCACAATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGAC  >  USA300TCH1516_ALE/781267‑781447
                                                                                          |                                                                                          
aggtgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccat                                                                                            >  1:2671915‑M1/91‑91 (MQ=255)
aggtgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccat                                                                                            <  1:139717‑M1/1‑1 (MQ=255)
 ggtgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatc                                                                                           >  1:2414718‑M1/90‑91 (MQ=255)
 aaTACCACAATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATtc                                                                                           <  1:1791677/91‑1 (MQ=255)
  gtgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaaggaagaaataccatca                                                                                          >  1:407012‑M1/89‑91 (MQ=255)
  aTACCACAATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATtca                                                                                          >  1:2811280/1‑91 (MQ=255)
   tgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatcat                                                                                         <  1:2295530‑M1/4‑1 (MQ=255)
   tgcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatcat                                                                                         <  1:869197‑M1/4‑1 (MQ=255)
   tACCACAATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATtcat                                                                                         >  1:2088583/1‑91 (MQ=255)
    gcagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatcatc                                                                                        >  1:524441‑M1/87‑91 (MQ=255)
     cagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatcatca                                                                                       >  1:2892836‑M1/86‑91 (MQ=255)
     cagatgactatgtcaaaaaaccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccatcatca                                                                                       >  1:1082340‑M1/86‑91 (MQ=255)
      cacaATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCaa                                                                                      <  1:1842900/91‑1 (MQ=255)
         aaTAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACg                                                                                   <  1:2272292/91‑1 (MQ=255)
          aTAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGa                                                                                  >  1:1580209/1‑91 (MQ=255)
            aaCTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACa                                                                                <  1:1630855/91‑1 (MQ=255)
             aCTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAg                                                                               <  1:3035306/91‑1 (MQ=255)
             aCTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAg                                                                               <  1:1109614/91‑1 (MQ=255)
             aCTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAg                                                                               <  1:1196280/91‑1 (MQ=255)
             aCTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAg                                                                               <  1:2416221/91‑1 (MQ=255)
              cTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAgt                                                                              <  1:3804303/91‑1 (MQ=255)
                cAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAgttg                                                                            >  1:3052540/1‑91 (MQ=255)
                        ttAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTg                                                                    <  1:153244/91‑1 (MQ=255)
                         tAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTgg                                                                   <  1:2536384/91‑1 (MQ=255)
                         tAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTgg                                                                   >  1:4068219/1‑91 (MQ=255)
                         tAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTgg                                                                   >  1:383433/1‑91 (MQ=255)
                         ccatttagtccaagggaactcgttttacgtattaataatttacttacaagaatgaataaataccaTCATCAAACGACAGTTGTTCAACTgg                                                                   >  1:1078852‑M1/66‑91 (MQ=255)
                          aaTACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGt                                                                  >  1:394303/1‑91 (MQ=255)
                          aaTACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGt                                                                  >  1:2694191/1‑91 (MQ=255)
                           aTACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGtt                                                                 <  1:2420134/91‑1 (MQ=255)
                            tACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTtg                                                                >  1:458505/1‑91 (MQ=255)
                              cGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCTAACGACAGTTGTTCAACTGGTtgat                                                              >  1:3880225/1‑91 (MQ=255)
                               gCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTtgatg                                                             >  1:2591849/1‑91 (MQ=255)
                               agtccaagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTtgatg                                                             >  1:1804122‑M1/60‑91 (MQ=255)
                                 aTAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTgatgat                                                           <  1:715167/91‑1 (MQ=255)
                                  tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                          <  1:1272115/91‑1 (MQ=255)
                                  tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                          <  1:1272188/91‑1 (MQ=255)
                                  tAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatgatg                                                          <  1:217067/91‑1 (MQ=255)
                                  tAGGAACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGatcatg                                                          >  1:3267675/1‑91 (MQ=255)
                                   aGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATgg                                                         <  1:2326307/91‑1 (MQ=255)
                                    gggACATCGTGACCATTTACAGTCACAACTTTACTTAAGCTAATAAGTGTTAACTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGt                                                        <  1:3855493/91‑1 (MQ=255)
                                    aagggaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGt                                                        >  1:823956‑M1/55‑91 (MQ=255)
                                       aCTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAtt                                                     >  1:1926782/1‑91 (MQ=255)
                                       aCTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAtt                                                     >  1:1943281/1‑91 (MQ=255)
                                        gaactcgttttacgtattaataatttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTAttt                                                    >  1:3601456‑M1/51‑91 (MQ=255)
                                         ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                   >  1:3669758/1‑91 (MQ=255)
                                         ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                   >  1:1837552/1‑91 (MQ=255)
                                         ttCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttc                                                   <  1:11657/91‑1 (MQ=255)
                                          tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                  <  1:2224822/91‑1 (MQ=255)
                                          tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                  >  1:1759951/1‑91 (MQ=255)
                                          tCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGCGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttct                                                  >  1:1358218/1‑91 (MQ=255)
                                           cGTGACCGTTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                 <  1:2084336/91‑1 (MQ=255)
                                           cGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                 >  1:3053186/1‑91 (MQ=255)
                                           cGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATttctt                                                 <  1:3267210/91‑1 (MQ=255)
                                                   tttACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTg                                         <  1:3302643/91‑1 (MQ=255)
                                                     tACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgta                                       >  1:85842/1‑91 (MQ=255)
                                                      aCAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaa                                      >  1:3019748/1‑91 (MQ=255)
                                                      aCAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaa                                      <  1:515251/91‑1 (MQ=255)
                                                       cAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaag                                     <  1:3520302/91‑1 (MQ=255)
                                                       cAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaag                                     >  1:2809419/1‑91 (MQ=255)
                                                          tCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTgtaactaa                                  >  1:3216404/1‑91 (MQ=255)
                                                           cacaACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTaaa                                 >  1:898473/1‑91 (MQ=255)
                                                              atttacttacaagaatgaagaaataccaTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAatta                              >  1:779241‑M1/29‑91 (MQ=255)
                                                               aCTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAattat                             >  1:988759/1‑91 (MQ=255)
                                                                cTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATACTTGTAAGTAAattatt                            <  1:2546714/91‑1 (MQ=255)
                                                                 tttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAAttatta                           >  1:1625572/1‑91 (MQ=255)
                                                                 tttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAAttatta                           >  1:2571327/1‑91 (MQ=255)
                                                                  ttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTaa                          <  1:1358349/91‑1 (MQ=255)
                                                                  ttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTaa                          <  1:285145/91‑1 (MQ=255)
                                                                  ttACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTaa                          <  1:4069302/91‑1 (MQ=255)
                                                                   tACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAAt                         <  1:3807040/91‑1 (MQ=255)
                                                                   tACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAAt                         >  1:1676327/1‑91 (MQ=255)
                                                                    aCTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATa                        >  1:858789/1‑91 (MQ=255)
                                                                    aCTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATa                        >  1:1518380/1‑91 (MQ=255)
                                                                     cTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTGAATTATTAATAc                       <  1:3173772/91‑1 (MQ=255)
                                                                     cTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATAc                       >  1:1260390/1‑91 (MQ=255)
                                                                       tAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGt                     <  1:2669440/91‑1 (MQ=255)
                                                                        aaGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTa                    <  1:747829/91‑1 (MQ=255)
                                                                         aGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTaa                   >  1:2242338/1‑91 (MQ=255)
                                                                             aataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACg               <  1:27033/91‑1 (MQ=255)
                                                                             aataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACg               <  1:607942/91‑1 (MQ=255)
                                                                              ataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGa              <  1:1432847/91‑1 (MQ=255)
                                                                              ataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGa              <  1:3228987/91‑1 (MQ=255)
                                                                              ataaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGa              <  1:2622968/91‑1 (MQ=255)
                                                                                aaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGt            >  1:955330/1‑91 (MQ=255)
                                                                                aaGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGt            <  1:3783056/91‑1 (MQ=255)
                                                                                 aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTCTTTCTTCATTCTTGTAAGTACATTATTAATACGTAAAACGAGtt           >  1:1243406/1‑91 (MQ=255)
                                                                                 aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt           >  1:2934520/1‑91 (MQ=255)
                                                                                 aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt           >  1:349279/1‑91 (MQ=255)
                                                                                 aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt           >  1:1638877/1‑91 (MQ=255)
                                                                                 aGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGtt           >  1:1638878/1‑91 (MQ=255)
                                                                                  gtgtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTc          <  1:742191/91‑1 (MQ=255)
                                                                                   tgtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTcc         >  1:609927/1‑91 (MQ=255)
                                                                                    gtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTccc        >  1:2778585/1‑91 (MQ=255)
                                                                                    gtTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTccc        >  1:376906/1‑91 (MQ=255)
                                                                                     ttAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCt       >  1:97332/1‑91 (MQ=255)
                                                                                     ttAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCt       >  1:99326/1‑91 (MQ=255)
                                                                                        aTTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTgg    <  1:1005348/91‑1 (MQ=255)
                                                                                         ttCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGa   >  1:3218344/1‑91 (MQ=255)
                                                                                          TCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGAc  >  1:1350995‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
AAATACCACAATAACTCAAATTCCTTAATACGCATAGGGACTTCGTGACCATTTACAGTCACAACTTTACTTAAGTTAATAAGTGTTAATTCATCAAACGACAGTTGTTCAACTGGTTGATGATGGTATTTCTTCATTCTTGTAAGTAAATTATTAATACGTAAAACGAGTTCCCTTGGAC  >  USA300TCH1516_ALE/781267‑781447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.