| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 783981 | 83 (0.840) | 12 (0.140) | 7/140 | NT | 13.4% | coding (683/714 nt) | queE_1 | 7‑carboxy‑7‑deazaguanine synthase |
| ? | USA300TCH1516_ALE | = 784017 | 82 (0.950) | coding (647/714 nt) | queE_1 | 7‑carboxy‑7‑deazaguanine synthase | |||||
ACTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/783882‑783981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtaatgATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTTTTT < USA300TCH1516_ALE/784017‑783928 ACTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCC < 1:941311/91‑1ACTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCC > 1:3258338/1‑91ACTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCC > 1:3257640/1‑91 CTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCc > 1:1447045/1‑90 CTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCA < 1:1441245/91‑1 TATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAA < 1:782008/91‑1 TATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAA < 1:782247/91‑1 TATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAA > 1:2735942/1‑91 ATTATATCAATTAGTATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAA > 1:4077466/1‑91 ATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAA > 1:1457237/1‑91 ATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAA < 1:875703/91‑1 ATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAA > 1:4077668/1‑91 TTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAG > 1:1323207/1‑91 TTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAG > 1:1384809/1‑91 TTATATCAACTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAG < 1:3969537/91‑1 ATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTA > 1:3712307/1‑91 TCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATG < 1:48280/91‑1 ACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACT < 1:827795/91‑1 CAAAAAGTAAAATGAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATA < 1:4151230/91‑1 AAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATAC < 1:749964/91‑1 AAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATAC < 1:749963/91‑1 AAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATAC < 1:943966/91‑1 AAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACAT < 1:1721207/91‑1 AAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATT < 1:1640066/91‑1 AAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATT < 1:1640046/91‑1 AATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTG < 1:3195383/91‑1 AATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTG < 1:499903/91‑1 AGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGC < 1:1267538/91‑1 AGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGC < 1:1267218/91‑1 CAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATT < 1:3996988/91‑1 CAAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATT > 1:1572758/1‑91 AAAGTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTT < 1:1417497/91‑1 GTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTAC < 1:607140/91‑1 GTAATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTAC < 1:607182/91‑1 AATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTT > 1:3926761/1‑91 ATGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTTT > 1:3810850/1‑91 TGATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTTTT > 1:3715356/1‑91 GATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTTTTT < 1:589885/91‑1 ACTATTATATCAATTAATATATTGTTATTCATTAGATATGACTTGCAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/783882‑783981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtaatgATATGAATCACGTTTATGTGTTACCACAACTTCATACATTACTTTGGAGCAATAAAAAAGGTGTATAAAGGATAACTTATTTTACTTTTT < USA300TCH1516_ALE/784017‑783928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |