BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 783981	83 (0.840)	12 (0.140)	7/140	NT	13.4%	coding (683/714 nt)	queE_1	7‑carboxy‑7‑deazaguanine synthase
*	?	USA300TCH1516_ALE	= 784017	82 (0.950)	12 (0.140)	7/140	NT	13.4%	coding (647/714 nt)	queE_1	7‑carboxy‑7‑deazaguanine synthase

Only 100 of 116 total aligned reads displayed.

CAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAATATGGGT  >  USA300TCH1516_ALE/783927‑784107

cAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCatat                                                                                            <  1:527882/91‑1 (MQ=255)

 aaaaaGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATc                                                                                           <  1:589885‑M2/91‑2 (MQ=255)

  aaaaGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATca                                                                                          >  1:3715356‑M2/1‑89 (MQ=255)

   aaaGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcat                                                                                         >  1:3810850‑M2/1‑88 (MQ=255)

    aaGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcatt                                                                                        >  1:3926761‑M2/1‑87 (MQ=255)

      gTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattac                                                                                      <  1:607140‑M2/91‑7 (MQ=255)

      gTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattac                                                                                      <  1:607182‑M2/91‑7 (MQ=255)

         aaaTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattacttt                                                                                   <  1:1417497‑M2/91‑10 (MQ=255)

          aaTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttg                                                                                  <  1:3996988‑M2/91‑11 (MQ=255)

          aaTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttg                                                                                  >  1:1572758‑M2/1‑81 (MQ=255)

           aTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGc                                                                                 <  1:1327776/91‑1 (MQ=255)

           aTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGc                                                                                 <  1:47248/91‑1 (MQ=255)

           aTAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGc                                                                                 >  1:3561319/1‑91 (MQ=255)

             aaGTTATCCTTTATACACCTTTTTTATTGCTCGAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCAt                                                                               <  1:3528337/91‑1 (MQ=255)

             aaGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCAt                                                                               >  1:2187726/1‑91 (MQ=255)

                ttATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAAc                                                                            <  1:923205/91‑1 (MQ=255)

                ttATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAAc                                                                            <  1:2406291/91‑1 (MQ=255)

                ttATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAAc                                                                            <  1:3012198/91‑1 (MQ=255)

                 tATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACt                                                                           <  1:2202753/91‑1 (MQ=255)

                   tCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTaa                                                                         >  1:3108744/1‑91 (MQ=255)

                         ataCACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATccac                                                                   <  1:877696/91‑1 (MQ=255)

                           acacCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATccacca                                                                 >  1:1200930/1‑91 (MQ=255)

                           acacCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATccacca                                                                 >  1:1871856/1‑91 (MQ=255)

                            cacCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCaa                                                                >  1:2405795/1‑91 (MQ=255)

                              ccTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACt                                                              >  1:3934834/1‑91 (MQ=255)

                              ccTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACt                                                              <  1:2109950/91‑1 (MQ=255)

                               cTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTg                                                             >  1:454905/1‑91 (MQ=255)

                                ttttttATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGc                                                            <  1:756219/91‑1 (MQ=255)

                                 tttttATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCt                                                           >  1:1583960/1‑91 (MQ=255)

                                 tttttATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCt                                                           <  1:3067023/91‑1 (MQ=255)

                                  ttttATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTc                                                          >  1:3705066/1‑91 (MQ=255)

                                  tttcATTGCACCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTc                                                          <  1:3732849/91‑1 (MQ=255)

                                    ttATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGt                                                        >  1:1438870/1‑91 (MQ=255)

                                      aTTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAg                                                      >  1:3165765/1‑91 (MQ=255)

                                      aTTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAg                                                      <  1:1285865/91‑1 (MQ=255)

                                      aTTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAg                                                      <  1:2785676/91‑1 (MQ=255)

                                        tGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCg                                                    <  1:940026/91‑1 (MQ=255)

                                         gCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataact                                                   <  1:1267538‑M2/91‑42 (MQ=255)

                                         gCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataact                                                   <  1:1267218‑M2/91‑42 (MQ=255)

                                         gCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGt                                                   <  1:266264/91‑1 (MQ=255)

                                         gCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGt                                                   >  1:593726/1‑91 (MQ=255)

                                          cTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGtt                                                  <  1:3281218/91‑1 (MQ=255)

                                          cTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGtt                                                  <  1:825180/91‑1 (MQ=255)

                                          cTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGtt                                                  <  1:824881/91‑1 (MQ=255)

                                            ccAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCt                                                <  1:4085792/91‑1 (MQ=255)

                                            ccAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCt                                                <  1:2121355/91‑1 (MQ=255)

                                            ccAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCt                                                <  1:3147601/91‑1 (MQ=255)

                                             cAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttatt                                               <  1:3195383‑M2/91‑46 (MQ=255)

                                             cAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttatt                                               <  1:499903‑M2/91‑46 (MQ=255)

                                             cAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTa                                               <  1:5468/91‑1 (MQ=255)

                                              aaaGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTaa                                              >  1:339997/1‑91 (MQ=255)

                                              aaaGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTaa                                              >  1:340026/1‑91 (MQ=255)

                                              aaaGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTaa                                              <  1:4077245/91‑1 (MQ=255)

                                                  tAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTaacaac                                          >  1:58286/1‑91 (MQ=255)

                                                   aaTGTATGAAGTTGTGGTAACACATCAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACt                                         <  1:3853089/91‑1 (MQ=255)

                                                   aaTGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttactt                                         <  1:1640046‑M2/91‑52 (MQ=255)

                                                    aTGTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttacttt                                        <  1:1721207‑M2/91‑53 (MQ=255)

                                                    aTGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACtt                                        >  1:736302/1‑91 (MQ=255)

                                                     tGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACttt                                       >  1:1600612/1‑91 (MQ=255)

                                                     tGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACttt                                       <  1:3944083/91‑1 (MQ=255)

                                                     tGTATGAAGTTGTGGTAACACATAAACGTGATTCATACCATTACTTCGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACttt                                       >  1:3309860/1‑91 (MQ=255)

                                                      gTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttacttttt                                      <  1:749964‑M2/91‑55 (MQ=255)

                                                      gTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttacttttt                                      <  1:749963‑M2/91‑55 (MQ=255)

                                                      gTATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttacttttt                                      <  1:943966‑M2/91‑55 (MQ=255)

                                                       tATGAAGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataactcattttactttttg                                     <  1:4151230‑M2/91‑56 (MQ=255)

                                                            aGTTGTGGTAACACATAAACGTGATTCATATcattactttggagcaataaaaaaggtgtataaaggataacttattttactttttgcaagt                                <  1:827795‑M2/91‑61 (MQ=255)

                                                             gTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATg                               <  1:76152/91‑1 (MQ=255)

                                                             gTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATg                               <  1:1548187/91‑1 (MQ=255)

                                                             gTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATg                               <  1:2833214/91‑1 (MQ=255)

                                                               tgtgGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGAt                             <  1:1849533/91‑1 (MQ=255)

                                                                  ggTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTAt                          >  1:1962131/1‑91 (MQ=255)

                                                                  ggTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTAt                          >  1:46250/1‑91 (MQ=255)

                                                                   gTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATc                         <  1:2711618/91‑1 (MQ=255)

                                                                   gTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATc                         >  1:3619852/1‑91 (MQ=255)

                                                                   gTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATc                         >  1:4060581/1‑91 (MQ=255)

                                                                    tAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCt                        <  1:4082049/91‑1 (MQ=255)

                                                                      acacATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTAc                      >  1:2443744/1‑91 (MQ=255)

                                                                      acacATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTAc                      <  1:1505651/91‑1 (MQ=255)

                                                                       cacacaAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACg                     >  1:3278573/1‑91 (MQ=255)

                                                                       cacacaAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACg                     >  1:3278824/1‑91 (MQ=255)

                                                                         caTAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCt                   >  1:1394998/1‑91 (MQ=255)

                                                                            aaaCGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTc                <  1:2889930/91‑1 (MQ=255)

                                                                             aaCGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCt               <  1:4108346/91‑1 (MQ=255)

                                                                             aaCGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCt               >  1:3027708/1‑91 (MQ=255)

                                                                               cGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGa             >  1:1501011/1‑91 (MQ=255)

                                                                                atGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGAt            >  1:3769005/2‑91 (MQ=255)

                                                                                 tGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATa           >  1:3070053/1‑91 (MQ=255)

                                                                                 tGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATa           >  1:1319263/1‑91 (MQ=255)

                                                                                 tGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATa           >  1:1140983/1‑91 (MQ=255)

                                                                                   aTTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATaaa         >  1:2688526/1‑91 (MQ=255)

                                                                                   aTTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATaaa         >  1:200253/1‑91 (MQ=255)

                                                                                   aTTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATaaa         >  1:185824/1‑91 (MQ=255)

                                                                                   aTTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGAATGATTATCTACGCTGTCTGATaaa         >  1:3867212/1‑91 (MQ=255)

                                                                                    ttCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAat        >  1:1227955/1‑91 (MQ=255)

                                                                                    ttCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAat        <  1:1103575/91‑1 (MQ=255)

                                                                                      cATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAatat      >  1:3200325/1‑91 (MQ=255)

                                                                                        tatCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAATATgg    <  1:3708939/91‑1 (MQ=255)

                                                                                         atCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAATATggg   <  1:3351349/91‑1 (MQ=255)

                                                                                          tCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACATCTTTTCGGTATGATTATCTACGCTGTCTGATAAATATGGGt  <  1:3592144/91‑1 (MQ=255)

                                                                                          tCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAATATGGGt  >  1:471252/1‑91 (MQ=255)

CAAAAAGTAAAATAAGTTATCCTTTATACACCTTTTTTATTGCTCCAAAGTAATGTATGAAGTTGTGGTAACACATAAACGTGATTCATATCATTACTTTGCATAACTAAATCCACCAACTGCTCGTAGCGTTCTAACAACTTTTCGGTATGATTATCTACGCTGTCTGATAAATATGGGT  >  USA300TCH1516_ALE/783927‑784107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.