| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 789633 | 96 (0.980) | 8 (0.090) | 6/148 | NT | 8.0% | coding (137/1005 nt) | kipA_1 | KipI antagonist |
| ? | USA300TCH1516_ALE | = 789649 | 94 (1.030) | coding (153/1005 nt) | kipA_1 | KipI antagonist | |||||
TCAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/789538‑789633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttgcTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCATA < USA300TCH1516_ALE/789649‑789560 TCAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTA < 1:1423689/91‑1TCAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTA < 1:1423720/91‑1 CAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAG > 1:1691144/1‑91 CAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAG < 1:1723003/91‑1 AGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGT < 1:1220088/91‑1 GATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATT < 1:3301713/91‑1 ATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTT < 1:74947/91‑1 TGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCA < 1:2878207/91‑1 AACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCAAC < 1:2414110/91‑1 AACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCAAC < 1:2414128/91‑1 AACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCAAC < 1:2413186/91‑1 ACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCAACT < 1:899373/91‑1 ATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCTTCATTCTTGTCATTTGCAACTAATCG < 1:3007896/91‑1 AGTTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGT < 1:1743311/91‑1 AGTTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGT > 1:3514179/1‑91 AGTTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGT < 1:1742482/91‑1 GTTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTT < 1:2231973/91‑1 GTTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTT > 1:2865553/1‑91 TTGCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGaaa > 1:1766918/1‑88 GCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCAT < 1:2750714/91‑1 GCTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCAT < 1:3420306/91‑1 CTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCATA < 1:1137656/91‑1 CTTCATTCTTGTCATTTGCAACTAATCGATGAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCATA < 1:2520248/91‑1 TCAGGACTTTGGCAGAAGGGGATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/789538‑789633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttgcTTCATTCTTGTCATTTGCAACTAATCGATTAGCAATTTCATGTGCTAAAGTATCAAGTGCACCACATGGAATTACACCATCATGTTCATA < USA300TCH1516_ALE/789649‑789560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |