BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 789633	96 (0.980)	8 (0.090)	6/148	NT	8.0%	coding (137/1005 nt)	kipA_1	KipI antagonist
*	?	USA300TCH1516_ALE	= 789649	94 (1.030)	8 (0.090)	6/148	NT	8.0%	coding (153/1005 nt)	kipA_1	KipI antagonist

Only 100 of 128 total aligned reads displayed.

ATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCTTAC  >  USA300TCH1516_ALE/789559‑789739

atatGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGaa                                                                                            >  1:3836189/1‑91 (MQ=255)

 tatGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTCATCGATTAGTTGCAAATGACAAGAATGAAg                                                                                           <  1:2520248‑M2/91‑2 (MQ=255)

 tatGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAg                                                                                           <  1:1137656‑M2/91‑2 (MQ=255)

  atGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgc                                                                                          <  1:3420306‑M2/91‑3 (MQ=255)

  atGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgc                                                                                          <  1:2750714‑M2/91‑3 (MQ=255)

     aaCATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgcaac                                                                                       >  1:2865553‑M2/1‑86 (MQ=255)

      aCATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgcaact                                                                                      <  1:1742482‑M2/91‑7 (MQ=255)

      aCATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgcaact                                                                                      >  1:3514179‑M2/1‑85 (MQ=255)

      aCATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAgcaact                                                                                      <  1:1743311‑M2/91‑7 (MQ=255)

       cATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACtt                                                                                     >  1:3202780/1‑91 (MQ=255)

           atgGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGa                                                                                 <  1:2831998/91‑1 (MQ=255)

           atgGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGa                                                                                 >  1:733451/1‑91 (MQ=255)

             ggTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGaaa                                                                               >  1:1975727/1‑91 (MQ=255)

             ggTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGaaa                                                                               >  1:1664229/1‑91 (MQ=255)

              gtgtAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAAt                                                                              >  1:1983268/1‑91 (MQ=255)

               tgtAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATg                                                                             <  1:4057954/91‑1 (MQ=255)

                 tAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGAc                                                                           >  1:1353583/1‑91 (MQ=255)

                  aaTTCGATGTGGTGCACTTGATACTATAGCACATGAAATGGCTAATCGATTAGGTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACt                                                                          <  1:3861243/91‑1 (MQ=255)

                  aaTTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACt                                                                          <  1:364259/91‑1 (MQ=255)

                  aaTTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACt                                                                          <  1:488385/91‑1 (MQ=255)

                   aTTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACta                                                                         >  1:2462530/1‑91 (MQ=255)

                   aTTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACta                                                                         <  1:739680/91‑1 (MQ=255)

                      ccATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACtaata                                                                      <  1:1681644/91‑1 (MQ=255)

                        aTGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATaaa                                                                    >  1:618191/1‑91 (MQ=255)

                          gtggtgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAAt                                                                  <  1:1713243/91‑1 (MQ=255)

                          gtggtgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAAt                                                                  >  1:2293597/1‑91 (MQ=255)

                            ggtgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGATAAGAATGAAGCAACTTTGGAAATGACTAATAAAATgg                                                                <  1:3513301/91‑1 (MQ=255)

                            ggtgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATgg                                                                >  1:3385591/1‑91 (MQ=255)

                             gtgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGc                                                               <  1:1830324/91‑1 (MQ=255)

                              tgCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCa                                                              >  1:1620610/1‑91 (MQ=255)

                                cACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAAc                                                            >  1:537892/1‑91 (MQ=255)

                                  cTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGa                                                          <  1:1578662/91‑1 (MQ=255)

                                  cTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGa                                                          <  1:3332248/91‑1 (MQ=255)

                                   ttGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGAt                                                         <  1:132746/91‑1 (MQ=255)

                                   ttGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGAt                                                         <  1:2399206/91‑1 (MQ=255)

                                   ttGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGAt                                                         <  1:1931554/91‑1 (MQ=255)

                                   ttGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGAt                                                         <  1:603988/91‑1 (MQ=255)

                                       tACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGt                                                     >  1:3258390/1‑91 (MQ=255)

                                           ttAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTa                                                 <  1:2991114/91‑1 (MQ=255)

                                           ttAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTa                                                 >  1:1063912/1‑91 (MQ=255)

                                            tAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTAc                                                >  1:290901/1‑91 (MQ=255)

                                            tAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTAc                                                <  1:2791045/91‑1 (MQ=255)

                                              gCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAg                                              >  1:2882182/1‑91 (MQ=255)

                                              gCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAg                                              >  1:2882149/1‑91 (MQ=255)

                                                acaTGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGaa                                            >  1:3062689/1‑91 (MQ=255)

                                                    gAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTa                                        >  1:3585150/1‑91 (MQ=255)

                                                    gAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTa                                        <  1:2506984/91‑1 (MQ=255)

                                                    gAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTa                                        <  1:1450151/91‑1 (MQ=255)

                                                     aaaTTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTAc                                       >  1:2320824/1‑91 (MQ=255)

                                                     aaaTTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTAc                                       >  1:2836736/1‑91 (MQ=255)

                                                      aaTTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACg                                      >  1:1370983/1‑91 (MQ=255)

                                                        ttGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCt                                    <  1:383687/91‑1 (MQ=255)

                                                        ttGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCt                                    >  1:1065201/1‑91 (MQ=255)

                                                         tGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTg                                   <  1:1540819/91‑1 (MQ=255)

                                                         tGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTg                                   <  1:1540938/91‑1 (MQ=255)

                                                          gCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGa                                  <  1:1510465/91‑1 (MQ=255)

                                                          gCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGa                                  >  1:3259561/1‑91 (MQ=255)

                                                          gCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGa                                  >  1:1452652/1‑91 (MQ=255)

                                                          gCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGa                                  <  1:3083852/91‑1 (MQ=255)

                                                           cTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGAt                                 <  1:3146287/91‑1 (MQ=255)

                                                           cTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGAt                                 <  1:1271054/91‑1 (MQ=255)

                                                              aTCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGc                              <  1:3825030/91‑1 (MQ=255)

                                                                cGATTAGTTGCAAATGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccat                            <  1:3007896‑M2/91‑65 (MQ=255)

                                                                cGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCAt                            >  1:2412458/1‑91 (MQ=255)

                                                                cGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCAt                            <  1:46146/91‑1 (MQ=255)

                                                                cGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCAt                            >  1:215829/1‑91 (MQ=255)

                                                                cGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCAt                            <  1:3546632/91‑1 (MQ=255)

                                                                   ttAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAg                         >  1:3584396/1‑91 (MQ=255)

                                                                    tAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGc                        >  1:3890951/1‑91 (MQ=255)

                                                                     aGTTGCAAATGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgt                       <  1:899373‑M2/91‑70 (MQ=255)

                                                                     aGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCa                       >  1:2138008/1‑91 (MQ=255)

                                                                      gTTGCAAATGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgtt                      <  1:2414110‑M2/91‑71 (MQ=255)

                                                                      gTTGCAAATGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgtt                      <  1:2414128‑M2/91‑71 (MQ=255)

                                                                      gTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAg                      >  1:203755/1‑91 (MQ=255)

                                                                        tGCAAATGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgttca                    <  1:2878207‑M2/91‑73 (MQ=255)

                                                                        tGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAggg                    >  1:1087648/1‑91 (MQ=255)

                                                                         gCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAgggg                   <  1:616988/91‑1 (MQ=255)

                                                                          cAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAggggg                  >  1:1999663/1‑91 (MQ=255)

                                                                          cAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAggggg                  <  1:2977180/91‑1 (MQ=255)

                                                                          cAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAggggg                  >  1:1867026/1‑91 (MQ=255)

                                                                           aaaTGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgttcatat                 <  1:74947‑M2/91‑76 (MQ=255)

                                                                           aaaTGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGt                 <  1:2982129/91‑1 (MQ=255)

                                                                           aaaTGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGt                 <  1:4053849/91‑1 (MQ=255)

                                                                            aaTGACAAGAATGAAgcaactaatcgattagcaatttcatgtgctaaagtatcaagtgcaccacatggaattacaccatcatgttcatatc                <  1:3301713‑M2/91‑77 (MQ=255)

                                                                            aaTGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTa                >  1:1710237/1‑91 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGATCCTACGCTGATTGCATTAGCAGGGGGTAATGt            <  1:2107331/91‑1 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGt            >  1:817075/1‑91 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGt            <  1:750043/91‑1 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGt            >  1:3646428/1‑91 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGt            <  1:50845/91‑1 (MQ=255)

                                                                                aCAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGt            <  1:2266627/91‑1 (MQ=255)

                                                                                  aaGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCa          >  1:4091061/1‑91 (MQ=255)

                                                                                  aaGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAACGTCa          >  1:3462896/1‑91 (MQ=255)

                                                                                       tGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCt     <  1:2367257/91‑1 (MQ=255)

                                                                                       tGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCt     <  1:2549125/91‑1 (MQ=255)

                                                                                        gAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCtt    >  1:1565505/1‑91 (MQ=255)

                                                                                        gAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCtt    >  1:3775128/1‑91 (MQ=255)

                                                                                        gAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCtt    >  1:2234070/1‑91 (MQ=255)

                                                                                        gAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCtt    <  1:814609/91‑1 (MQ=255)

                                                                                          aGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCTTac  <  1:1830596/91‑1 (MQ=255)

ATATGAACATGATGGTGTAATTCCATGTGGTGCACTTGATACTTTAGCACATGAAATTGCTAATCGATTAGTTGCAAATGACAAGAATGAAGCAACTTTGGAAATGACTAATAAAATGGCAACGATTCGTTTTACAGAACCTACGCTGATTGCATTAGCAGGGGGTAATGTCAAAGCTTAC  >  USA300TCH1516_ALE/789559‑789739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.