BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1271425 =	87 (0.880)	7 (0.080)	5/146	NT	9.1%	coding (760/897 nt)	xerC_1	Tyrosine recombinase XerC
*	?	USA300TCH1516_ALE	1271456 =	61 (0.680)	7 (0.080)	5/146	NT	9.1%	coding (791/897 nt)	xerC_1	Tyrosine recombinase XerC

Only 100 of 108 total aligned reads displayed.

TATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAG  >  USA300TCH1516_ALE/1271337‑1271515

ttcgctcgaggatgtgcatttagatacacttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGAc                                                                                          <  1:1324818‑M1/3‑1 (MQ=255)

ttcgctcgaggatgtgcatttagatacacttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGAc                                                                                          <  1:3490943‑M1/3‑1 (MQ=255)

tatTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGAc                                                                                          <  1:2654018/91‑1 (MQ=255)

tatTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGAc                                                                                          <  1:128533/91‑1 (MQ=255)

  cgctcgaggatgtgcatttagatacacttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCt                                                                                        >  1:3953503‑M1/87‑91 (MQ=255)

   tGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTa                                                                                       <  1:600694/91‑1 (MQ=255)

   gcgcgaggatgtgcatttagatacacttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTa                                                                                       >  1:1241691‑M1/86‑91 (MQ=255)

    ctcgaggatgtgcatttagatacacttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTaa                                                                                      <  1:3703108‑M1/7‑1 (MQ=255)

      tAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGa                                                                                    >  1:417086/1‑91 (MQ=255)

      tAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGa                                                                                    <  1:2731373/91‑1 (MQ=255)

      tAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGa                                                                                    <  1:2731388/91‑1 (MQ=255)

      tAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGa                                                                                    <  1:2731509/91‑1 (MQ=255)

      tAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGa                                                                                    >  1:417326/1‑91 (MQ=255)

       aaaCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGaa                                                                                   >  1:401198/1‑91 (MQ=255)

       aaaCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGaa                                                                                   >  1:401842/1‑91 (MQ=255)

        aaCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAAc                                                                                  <  1:3272936/91‑1 (MQ=255)

        aaCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAAc                                                                                  <  1:59418/91‑1 (MQ=255)

        aaCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAAc                                                                                  <  1:3272131/91‑1 (MQ=255)

         aCGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACa                                                                                 <  1:1020421/91‑1 (MQ=255)

          cGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAg                                                                                <  1:3672684/91‑1 (MQ=255)

          cGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAg                                                                                <  1:3672428/91‑1 (MQ=255)

          cGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAg                                                                                <  1:3461633/91‑1 (MQ=255)

           gAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTGGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGt                                                                               <  1:3600486/91‑1 (MQ=255)

               agcagGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACaa                                                                           >  1:1082349/1‑91 (MQ=255)

                    gCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGtt                                                                      >  1:786823/1‑91 (MQ=255)

                    gCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGtt                                                                      >  1:787230/1‑91 (MQ=255)

                     cGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGtta                                                                     >  1:1436225/1‑91 (MQ=255)

                     cGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGtta                                                                     <  1:629050/91‑1 (MQ=255)

                      gTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGttat                                                                    <  1:1923537/91‑1 (MQ=255)

                        aaGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGttatta                                                                  >  1:1226690/1‑91 (MQ=255)

                         aGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAg                                                                 >  1:2313415/1‑91 (MQ=255)

                          gTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAgg                                                                >  1:3018832/1‑91 (MQ=255)

                          gTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAgg                                                                <  1:1169152/91‑1 (MQ=255)

                          gTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAgg                                                                >  1:2464214/1‑91 (MQ=255)

                          gTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAgg                                                                >  1:2563690/1‑91 (MQ=255)

                          gTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAgg                                                                >  1:2563333/1‑91 (MQ=255)

                             ttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCa                                                             >  1:88559‑M1/60‑91 (MQ=255)

                             ttttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCa                                                             >  1:2462875‑M1/60‑91 (MQ=255)

                             agaTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCa                                                             <  1:1568683/91‑1 (MQ=255)

                             agaTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCa                                                             <  1:377842/91‑1 (MQ=255)

                              tttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCAt                                                            >  1:3909007‑M1/59‑91 (MQ=255)

                               ttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           >  1:4072976‑M1/58‑91 (MQ=255)

                               ttcttaattgttggttagatacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           >  1:4072149‑M1/58‑91 (MQ=255)

                               aTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           <  1:409658/91‑1 (MQ=255)

                               aTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           >  1:1815945/1‑91 (MQ=255)

                               aTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           <  1:410790/91‑1 (MQ=255)

                               aTTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATg                                                           <  1:410134/91‑1 (MQ=255)

                                ttCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGt                                                          <  1:223968/91‑1 (MQ=255)

                                ttCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGt                                                          <  1:3320727/91‑1 (MQ=255)

                                ttCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGt                                                          >  1:322531/1‑91 (MQ=255)

                                ttCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGt                                                          <  1:225845/91‑1 (MQ=255)

                                   aTCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTaa                                                       <  1:3952668/91‑1 (MQ=255)

                                   aTCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTaa                                                       <  1:3952738/91‑1 (MQ=255)

                                    tCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAAt                                                      >  1:1783641/1‑91 (MQ=255)

                                     ccccACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAAtt                                                     >  1:1763888/1‑91 (MQ=255)

                                     ccccACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAAtt                                                     <  1:2361981/91‑1 (MQ=255)

                                       ccACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTg                                                   >  1:2122642/1‑91 (MQ=255)

                                        cacaAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGt                                                  >  1:1008486/1‑91 (MQ=255)

                                        cacaAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGt                                                  >  1:1008426/1‑91 (MQ=255)

                                          caAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTca                                                >  1:4003316/1‑91 (MQ=255)

                                          caAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTca                                                >  1:4003326/1‑91 (MQ=255)

                                          caAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTca                                                >  1:3096992/1‑91 (MQ=255)

                                             gCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTcaaca                                             <  1:1648636/91‑1 (MQ=255)

                                               tCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCaacaac                                           <  1:923991/91‑1 (MQ=255)

                                                cAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACt                                          >  1:1726516/1‑91 (MQ=255)

                                                cAGACATACATTTGCAACGCATTTATTGAATCAAGGTACAGACCTAAGAACTGTACAATCGTTATTAGGTCATGTTAATTTGTCATCAACt                                          >  1:3856842/1‑91 (MQ=255)

                                                 atacgtgtgtatatttaccagttgttgacaaattaacatGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTg                                         >  1:2781996‑M1/40‑91 (MQ=255)

                                                 aGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTTCAATCGTTATTAGGTCATGTTAATTTGTCAACAACTg                                         <  1:3500230/91‑1 (MQ=255)

                                                 aGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTg                                         <  1:2472920/91‑1 (MQ=255)

                                                   acatacatTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGt                                       >  1:40526/1‑91 (MQ=255)

                                                   acagacatTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGt                                       <  1:3731012/87‑1 (MQ=255)

                                                      tacatTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTaaa                                    >  1:907260/1‑91 (MQ=255)

                                                      tacatTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTaaa                                    <  1:2979160/91‑1 (MQ=255)

                                                       acatTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAat                                   >  1:1757882/1‑91 (MQ=255)

                                                          tttGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAAtata                                <  1:1086948/91‑1 (MQ=255)

                                                          tttGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAAtata                                <  1:3414544/91‑1 (MQ=255)

                                                          tttGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAAtata                                <  1:3413569/91‑1 (MQ=255)

                                                              cAACGCATTTATTGAATCAAGGTGCAGACCTATGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATacaca                            <  1:3528275/91‑1 (MQ=255)

                                                               aaCGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGTTCATGTTAATTTGTCAACAACTGGTAAATATacacac                           <  1:3486933/91‑1 (MQ=255)

                                                               aaCGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATacacac                           <  1:3003271/91‑1 (MQ=255)

                                                                  gCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTa                        <  1:2431673/91‑1 (MQ=255)

                                                                  gCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTa                        >  1:1519071/1‑91 (MQ=255)

                                                                    aTTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATc                      >  1:2551105/1‑91 (MQ=255)

                                                                      ttATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTa                    <  1:3794304/91‑1 (MQ=255)

                                                                      ttATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTa                    >  1:699785/1‑91 (MQ=255)

                                                                       tATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTaa                   >  1:3694950/1‑91 (MQ=255)

                                                                           gAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACcaa               >  1:752813/1‑91 (MQ=255)

                                                                              tCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACcaacaa            <  1:3160094/91‑1 (MQ=255)

                                                                                aaGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAAtt          <  1:3998632/91‑1 (MQ=255)

                                                                                 aGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTa         <  1:547914/91‑1 (MQ=255)

                                                                                 aGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTa         >  1:3355854/1‑91 (MQ=255)

                                                                                 aGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTa         <  1:2512016/91‑1 (MQ=255)

                                                                                 aGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTa         >  1:2720941/1‑91 (MQ=255)

                                                                                   gTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAg       >  1:1425433/1‑91 (MQ=255)

                                                                                     gCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGaa     >  1:721387/1‑91 (MQ=255)

                                                                                      cAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGaaa    >  1:1833673/1‑91 (MQ=255)

                                                                                      cAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGaaa    >  1:1833837/1‑91 (MQ=255)

                                                                                      cAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGaaa    <  1:2261611/91‑1 (MQ=255)

                                                                                        GACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAg  <  1:1168856‑M1/91‑1 (MQ=255)

                                                                                        GACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAg  >  1:2916178‑M1/1‑91 (MQ=255)

TATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTCAGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCGTTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAATTAAGAAAAG  >  USA300TCH1516_ALE/1271337‑1271515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.