BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1355817 =	108 (1.100)	6 (0.070)	5/144	NT	5.7%	coding (1330/1383 nt)	yclM	Aspartokinase 3
*	?	USA300TCH1516_ALE	1355853 =	101 (1.140)	6 (0.070)	5/144	NT	5.7%	coding (1294/1383 nt)	yclM	Aspartokinase 3

Only 100 of 148 total aligned reads displayed.

ACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTT  >  USA300TCH1516_ALE/1355727‑1355907

ataaaattacacatgccttagctgaatcaaaaattaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattca                                                                                            >  1:390702‑M1/91‑91 (MQ=255)

aCGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCata                                                                                            >  1:70754/1‑91 (MQ=255)

  gCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATg                                                                                          >  1:3723166/1‑91 (MQ=255)

  aaaattacacatgccttagctgaatcaaaaattaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATg                                                                                          >  1:3372266‑M1/89‑91 (MQ=255)

  aaaattacacatgccttagctgaatcaaaaattaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATg                                                                                          >  1:2100191‑M1/89‑91 (MQ=255)

    aattacacatgccttagctgaatcaaaaattaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTa                                                                                        <  1:1621341‑M1/5‑1 (MQ=255)

    aGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTa                                                                                        <  1:3141206/91‑1 (MQ=255)

      ttacacatgccttagctgaatcaaaaattaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGa                                                                                      <  1:194067‑M1/7‑1 (MQ=255)

      ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                                                                                      >  1:87477/1‑91 (MQ=255)

      ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                                                                                      >  1:3626248/1‑91 (MQ=255)

       tGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGat                                                                                     >  1:240195/1‑91 (MQ=255)

         aaTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataa                                                                                   >  1:2198966/1‑91 (MQ=255)

          aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat                                                                                  <  1:3143920/91‑1 (MQ=255)

           tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                                                                                 <  1:3796005/91‑1 (MQ=255)

           tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                                                                                 <  1:3795235/91‑1 (MQ=255)

           tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                                                                                 <  1:3794945/91‑1 (MQ=255)

            aCATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATAc                                                                                <  1:3217417/91‑1 (MQ=255)

            aCATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATAc                                                                                <  1:856401/91‑1 (MQ=255)

             cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCTCGTGATAGCAAAACTCATATGTAGATAATACa                                                                               >  1:3544647/1‑91 (MQ=255)

             cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACa                                                                               <  1:1643617/91‑1 (MQ=255)

             cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCACGTGATAGCAAAACTCATATGTAGATAATACa                                                                               >  1:3544858/1‑91 (MQ=255)

              aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg                                                                              <  1:1688200/91‑1 (MQ=255)

              aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg                                                                              <  1:432925/91‑1 (MQ=255)

                  gtTACGAAGTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCttt                                                                          <  1:2697673/91‑1 (MQ=255)

                     aCGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTc                                                                       >  1:1031524/1‑91 (MQ=255)

                        aattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGc                                                                    <  1:2153717‑M2/81‑1 (MQ=255)

                        aattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGc                                                                    <  1:213572‑M2/81‑1 (MQ=255)

                               tttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATCGCAAAACTCATATGTAGATAATACAGCTTCTTCAGCATCATCt                                                             >  1:4153993‑M2/4‑91 (MQ=255)

                                ttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTa                                                            >  1:814174‑M2/3‑91 (MQ=255)

                                 ttaacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGATAATACAGCTTTTTCAGCATCATCTAc                                                           >  1:1445651‑M1/58‑91 (MQ=255)

                                 tATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTAc                                                           <  1:1807758‑M2/90‑1 (MQ=255)

                                  taacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGATAATACAGCTTTTTCAGCATCATCTACa                                                          >  1:3368600‑M1/57‑91 (MQ=255)

                                  atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACa                                                          >  1:1376276/1‑91 (MQ=255)

                                  atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCGACa                                                          >  1:3737928/1‑91 (MQ=255)

                                  atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCGACa                                                          >  1:3737821/1‑91 (MQ=255)

                                   aacttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGATAATACAGCTTTTTCAGCATCATCTACAt                                                         >  1:2600941‑M1/56‑91 (MQ=255)

                                    atTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                        <  1:1263604/91‑1 (MQ=255)

                                    atTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                        <  1:1839234/91‑1 (MQ=255)

                                    acttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                        >  1:2706161‑M1/55‑91 (MQ=255)

                                       aGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATGTACATGAAt                                                     >  1:3962645/1‑91 (MQ=255)

                                        gTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAAtt                                                    <  1:3659883/91‑1 (MQ=255)

                                          ttttATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTcc                                                  <  1:3974965/91‑1 (MQ=255)

                                           tttATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCa                                                 >  1:3206255/1‑91 (MQ=255)

                                            ttATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaa                                                <  1:592336/91‑1 (MQ=255)

                                             tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                               >  1:2975018/1‑91 (MQ=255)

                                             tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                               >  1:2693195/1‑91 (MQ=255)

                                             tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                               >  1:2693047/1‑91 (MQ=255)

                                              aTCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAc                                              >  1:4033955/1‑91 (MQ=255)

                                              aTCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAc                                              >  1:2288565/1‑91 (MQ=255)

                                               tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGGTAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                             <  1:3590962/91‑1 (MQ=255)

                                               tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                             >  1:2578921/1‑91 (MQ=255)

                                               tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                             >  1:1033776/1‑91 (MQ=255)

                                               tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                             >  1:3878054/1‑91 (MQ=255)

                                                 acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                           >  1:939455/1‑91 (MQ=255)

                                                 acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                           <  1:2273335/91‑1 (MQ=255)

                                                 acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                           >  1:2822488/1‑91 (MQ=255)

                                                   acaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatcat                                         >  1:2866258/1‑91 (MQ=255)

                                                    caAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACatcatc                                        >  1:2258157/1‑91 (MQ=255)

                                                     aaGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCg                                       >  1:1336953/1‑91 (MQ=255)

                                                       gTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCgag                                     >  1:3068648/1‑91 (MQ=255)

                                                       gTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCgag                                     >  1:1435398/1‑91 (MQ=255)

                                                        ttttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCgaga                                    >  1:1024403/1‑91 (MQ=255)

                                                         tttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCCGCATCATCTACATGAATTCCAAACATCATCGAGAt                                   <  1:638210/91‑1 (MQ=255)

                                                          ttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGAtt                                  >  1:3448830/1‑91 (MQ=255)

                                                          ttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGAtt                                  >  1:3448475/1‑91 (MQ=255)

                                                            ttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTc                                >  1:435293/1‑91 (MQ=255)

                                                            ttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTc                                >  1:3842590/1‑91 (MQ=255)

                                                              aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCTTCGAGATTTCCg                              <  1:3177476/91‑1 (MQ=255)

                                                              aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                              >  1:31755/1‑91 (MQ=255)

                                                              aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                              >  1:2629089/1‑91 (MQ=255)

                                                              aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                              >  1:317630/1‑91 (MQ=255)

                                                               aTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGa                             >  1:2053904/1‑91 (MQ=255)

                                                               aTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGa                             <  1:3760858/91‑1 (MQ=255)

                                                                 gCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAg                           >  1:649039/1‑91 (MQ=255)

                                                                  cAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGc                          <  1:1685462/91‑1 (MQ=255)

                                                                   aaCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCa                         >  1:2486417/1‑91 (MQ=255)

                                                                   aaCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCa                         >  1:1752522/1‑91 (MQ=255)

                                                                   aaCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCa                         <  1:1087768/91‑1 (MQ=255)

                                                                    aCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAc                        <  1:777812/91‑1 (MQ=255)

                                                                     ccccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAcc                       >  1:1639692/1‑91 (MQ=255)

                                                                     ccccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAcc                       >  1:1639320/1‑91 (MQ=255)

                                                                      cccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCt                      >  1:2647831/1‑91 (MQ=255)

                                                                         gTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTgg                   <  1:401674/91‑1 (MQ=255)

                                                                          tGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGt                  <  1:2140649/91‑1 (MQ=255)

                                                                            aTAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTa                >  1:3088357/1‑91 (MQ=255)

                                                                              aGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAAt              <  1:469733/91‑1 (MQ=255)

                                                                                cAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCa            <  1:852856/91‑1 (MQ=255)

                                                                                 aaaaCTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAt           >  1:1513849/1‑91 (MQ=255)

                                                                                 aaaaCTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAt           >  1:2889406/1‑91 (MQ=255)

                                                                                 aaaaCTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAt           >  1:757530/1‑91 (MQ=255)

                                                                                    aCTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAtttt        <  1:1751942/91‑1 (MQ=255)

                                                                                       cATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTaa     >  1:370530/1‑91 (MQ=255)

                                                                                        atatatAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg    <  1:3346737/91‑1 (MQ=255)

                                                                                        atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg    <  1:3346601/91‑1 (MQ=255)

                                                                                        atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg    >  1:444571/1‑91 (MQ=255)

                                                                                        atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg    >  1:3612010/1‑91 (MQ=255)

                                                                                         tatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGt   <  1:1486706/91‑1 (MQ=255)

                                                                                         tatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAACTTGGTTAATCATTTTTAAGt   >  1:2248023/1‑91 (MQ=255)

                                                                                          ATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGtt  >  1:502518‑M1/1‑91 (MQ=255)

                                                                                          ATGTAGATAACACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGtt  <  1:414690‑M1/91‑1 (MQ=255)

ACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTT  >  USA300TCH1516_ALE/1355727‑1355907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.