BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1355817 =	108 (1.100)	6 (0.070)	5/144	NT	5.7%	coding (1330/1383 nt)	yclM	Aspartokinase 3
*	?	USA300TCH1516_ALE	1355853 =	101 (1.140)	6 (0.070)	5/144	NT	5.7%	coding (1294/1383 nt)	yclM	Aspartokinase 3

Only 100 of 146 total aligned reads displayed.

ATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAATTTTATT  >  USA300TCH1516_ALE/1355763‑1355943

atTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                                                            <  1:1839234/91‑1 (MQ=255)

atTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                                                            <  1:1263604/91‑1 (MQ=255)

acttaaaaatgattaaccaaggtgcttcggaaatctcgatgatgtttggaattcATGTAGATAATACAGCTTTTTCAGCATCATCTACATg                                                                                            >  1:2706161‑M1/55‑91 (MQ=255)

 ttAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACCTGa                                                                                           >  1:3348655/1‑91 (MQ=255)

 ttAGTTTTTATCACACAAGTCTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGa                                                                                           <  1:865224/91‑1 (MQ=255)

   aGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATGTACATGAAt                                                                                         >  1:3962645/1‑91 (MQ=255)

   aGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAAt                                                                                         >  1:1684670/1‑91 (MQ=255)

   aGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAAt                                                                                         >  1:2784641/1‑91 (MQ=255)

    gTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAAtt                                                                                        <  1:2261825/91‑1 (MQ=255)

       tttATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCa                                                                                     >  1:3206255/1‑91 (MQ=255)

        ttATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaa                                                                                    <  1:592336/91‑1 (MQ=255)

         tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                                                                   >  1:2975018/1‑91 (MQ=255)

         tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                                                                   >  1:2693195/1‑91 (MQ=255)

         tATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCaaa                                                                                   >  1:2693047/1‑91 (MQ=255)

           tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                                                                 >  1:3878054/1‑91 (MQ=255)

           tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                                                                 >  1:2578921/1‑91 (MQ=255)

           tCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAca                                                                                 >  1:1033776/1‑91 (MQ=255)

             acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                                                               >  1:939455/1‑91 (MQ=255)

             acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                                                               >  1:2822488/1‑91 (MQ=255)

             acacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatc                                                                               <  1:2273335/91‑1 (MQ=255)

              cacaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatca                                                                              >  1:494761/1‑91 (MQ=255)

               acaAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAAcatcat                                                                             >  1:2866258/1‑91 (MQ=255)

                 aaGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCg                                                                           <  1:661786/91‑1 (MQ=255)

                   gTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCgag                                                                         >  1:1435398/1‑91 (MQ=255)

                    ttttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCgaga                                                                        >  1:1024403/1‑91 (MQ=255)

                     tttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCCGCATCATCTACATGAATTCCAAACATCATCGAGAt                                                                       <  1:638210/91‑1 (MQ=255)

                      ttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGAtt                                                                      >  1:3448475/1‑91 (MQ=255)

                      ttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGAtt                                                                      >  1:382840/1‑91 (MQ=255)

                      ttttAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGAtt                                                                      >  1:765101/1‑91 (MQ=255)

                          aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                                                                  >  1:31755/1‑91 (MQ=255)

                          aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                                                                  >  1:317630/1‑91 (MQ=255)

                          aaTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCg                                                                  >  1:2629089/1‑91 (MQ=255)

                           aTGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGa                                                                 >  1:2053904/1‑91 (MQ=255)

                            tGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGaa                                                                <  1:35660/91‑1 (MQ=255)

                             gCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAg                                                               >  1:649039/1‑91 (MQ=255)

                              cAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGc                                                              <  1:312616/91‑1 (MQ=255)

                               aaCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCa                                                             >  1:1752522/1‑91 (MQ=255)

                                aCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAc                                                            <  1:777812/91‑1 (MQ=255)

                                aCCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAc                                                            <  1:1876966/91‑1 (MQ=255)

                                 ccccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAcc                                                           >  1:1639320/1‑91 (MQ=255)

                                 ccccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAcc                                                           >  1:1639692/1‑91 (MQ=255)

                                  cccGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCt                                                          >  1:2647831/1‑91 (MQ=255)

                                    cGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTg                                                        >  1:1288614/1‑91 (MQ=255)

                                     gTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTgg                                                       <  1:401674/91‑1 (MQ=255)

                                      tGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGt                                                      <  1:2136588/91‑1 (MQ=255)

                                      tGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGt                                                      <  1:2140649/91‑1 (MQ=255)

                                       gATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGtt                                                     <  1:15679/91‑1 (MQ=255)

                                        aTAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTa                                                    <  1:3324985/91‑1 (MQ=255)

                                        aTAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTa                                                    >  1:3088357/1‑91 (MQ=255)

                                         tAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTaa                                                   <  1:343449/91‑1 (MQ=255)

                                          aGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAAt                                                  <  1:208945/91‑1 (MQ=255)

                                           gCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATc                                                 <  1:1085601/91‑1 (MQ=255)

                                                aCTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAtttt                                            <  1:1751942/91‑1 (MQ=255)

                                                 cTCATATGTAGACAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCAttttt                                           >  1:3202240/1‑91 (MQ=255)

                                                   cATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTaa                                         >  1:370530/1‑91 (MQ=255)

                                                    atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg                                        >  1:3612010/1‑91 (MQ=255)

                                                    atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg                                        <  1:3660700/91‑1 (MQ=255)

                                                    atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg                                        >  1:444571/1‑91 (MQ=255)

                                                    atatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAg                                        <  1:3346601/91‑1 (MQ=255)

                                                     tatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGt                                       <  1:1486706/91‑1 (MQ=255)

                                                     tatGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCAACTTGGTTAATCATTTTTAAGt                                       >  1:2248023/1‑91 (MQ=255)

                                                     catgtagatgatgctgaaaaagctgtattatctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGt                                       >  1:2706161‑M2/38‑91 (MQ=255)

                                                      atgtagatgatgctgaaaaagctgtattatctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGtt                                      >  1:2600941‑M2/37‑91 (MQ=255)

                                                      ATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGtt                                      >  1:502518‑M1/1‑91 (MQ=255)

                                                      ATGTAGATAACACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGtt                                      <  1:414690‑M1/91‑1 (MQ=255)

                                                       tgtagatgatgctgaaaaagctgtattatctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTa                                     >  1:3368600‑M2/36‑91 (MQ=255)

                                                        gtagatgatgctgaaaaagctgtattatctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTaa                                    >  1:1445651‑M2/35‑91 (MQ=255)

                                                         tagatgatgctgaaaaagctgtattatctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAAt                                   >  1:823872‑M2/34‑91 (MQ=255)

                                                          AGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAAtt                                  <  1:1626794‑M1/91‑1 (MQ=255)

                                                           GATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAAttt                                 >  1:4118014‑M1/1‑91 (MQ=255)

                                                             TAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAAttttt                               <  1:650928‑M1/91‑1 (MQ=255)

                                                             TAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAAttttt                               >  1:835196‑M1/1‑91 (MQ=255)

                                                               ataCAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGa                             <  1:3518882/91‑1 (MQ=255)

                                                                 aCAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTGAATTTTTGAtt                           >  1:3769460/1‑91 (MQ=255)

                                                                  cAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTc                          <  1:437761/91‑1 (MQ=255)

                                                                   aGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCa                         >  1:4038323/1‑91 (MQ=255)

                                                                    gcgttttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAg                        <  1:1561569/88‑1 (MQ=255)

                                                                    gCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAg                        <  1:2358351/91‑1 (MQ=255)

                                                                    gCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAg                        >  1:3023545/1‑91 (MQ=255)

                                                                      tttttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCt                      <  1:1977374/91‑1 (MQ=255)

                                                                      tttttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCt                      <  1:1977629/91‑1 (MQ=255)

                                                                      tttttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCt                      >  1:2707020/1‑91 (MQ=255)

                                                                       ttttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTa                     <  1:1111744/91‑1 (MQ=255)

                                                                         ttCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGACTCAGCTAAg                   >  1:3975329/1‑91 (MQ=255)

                                                                           cAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCAAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGc                 >  1:3601194/1‑91 (MQ=255)

                                                                            aGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCa                <  1:4146668/91‑1 (MQ=255)

                                                                            aGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCa                <  1:223818/91‑1 (MQ=255)

                                                                            aGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCa                <  1:4101874/91‑1 (MQ=255)

                                                                               atcatcTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCAtgt             <  1:1506698/91‑1 (MQ=255)

                                                                               atcatcTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCAtgt             <  1:2271375/91‑1 (MQ=255)

                                                                               atcatcTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCAtgt             <  1:2270881/91‑1 (MQ=255)

                                                                                tcatcTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCAtgtg            >  1:1955762/1‑91 (MQ=255)

                                                                                   tctacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTaa         <  1:420127‑M2/84‑1 (MQ=255)

                                                                                     tacatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAAtt       <  1:1621341‑M2/86‑1 (MQ=255)

                                                                                      acatGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAAttt      <  1:2553119‑M2/87‑1 (MQ=255)

                                                                                       catGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAAtttt     >  1:2353660‑M2/4‑91 (MQ=255)

                                                                                       catGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAAtttt     >  1:3372266‑M2/4‑91 (MQ=255)

                                                                                        atGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAATTTTa    <  1:3037086‑M2/89‑1 (MQ=255)

                                                                                         tGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAATTTTAt   >  1:390702‑M2/2‑91 (MQ=255)

                                                                                          gAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAATTTTAtt  <  1:1185682/91‑1 (MQ=255)

ATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACATGAATTCCAAACATCATCGAGATTTCCGAAGCACCTTGGTTAATCATTTTTAAGTTAATTTTTGATTCAGCTAAGGCATGTGTAATTTTATT  >  USA300TCH1516_ALE/1355763‑1355943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.