BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1645378 =	118 (1.200)	17 (0.190)	8/148	NT	13.8%	coding (188/558 nt)	efp	Elongation factor P
*	?	USA300TCH1516_ALE	1645401 =	103 (1.130)	17 (0.190)	8/148	NT	13.8%	coding (165/558 nt)	efp	Elongation factor P

Only 100 of 162 total aligned reads displayed.

AGTTCTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAAC  >  USA300TCH1516_ALE/1645288‑1645468

caacatgtaaagcctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagag                                                                                            >  1:3059334‑M1/91‑91 (MQ=255)

  ttCTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCt                                                                                          <  1:4134921/91‑1 (MQ=255)

   tCTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTg                                                                                         >  1:1447085/1‑91 (MQ=255)

   tCTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGAGTTTCAATCATTGCTg                                                                                         <  1:3539865/91‑1 (MQ=255)

   catgtaaagcctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTg                                                                                         >  1:3792758‑M1/88‑91 (MQ=255)

   catgtaaagcctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTg                                                                                         <  1:2533353‑M1/4‑1 (MQ=255)

    cTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTgg                                                                                        <  1:2985149/91‑1 (MQ=255)

    cTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTgg                                                                                        <  1:2393050/91‑1 (MQ=255)

    cTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTgg                                                                                        >  1:1973528/1‑91 (MQ=255)

    cTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTgg                                                                                        >  1:2682970/1‑91 (MQ=255)

    atgtaaagcctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTgg                                                                                        <  1:4037711‑M1/5‑1 (MQ=255)

     tgtaaagcctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGt                                                                                       >  1:3526544‑M1/86‑91 (MQ=255)

       tttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     <  1:2828977/91‑1 (MQ=255)

       tttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     >  1:3118725/1‑91 (MQ=255)

       tttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     >  1:2025711/1‑91 (MQ=255)

       tttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     >  1:1244706/1‑91 (MQ=255)

       tttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     <  1:1181905/91‑1 (MQ=255)

       tttgttCAAAGCCTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTc                                                                                     >  1:1244762/1‑91 (MQ=255)

        ttgttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAGATATTGCATGCGACGATTTTCAATCATTGCTGGTTCa                                                                                    <  1:3962229/91‑1 (MQ=255)

          gttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAAc                                                                                  >  1:3219376/1‑91 (MQ=255)

          gttCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAAc                                                                                  >  1:1655264/1‑91 (MQ=255)

            cctggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACtt                                                                                >  1:622767‑M1/79‑91 (MQ=255)

             cAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACttt                                                                               <  1:1788692/91‑1 (MQ=255)

              tggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACtttt                                                                              >  1:2829499‑M1/77‑91 (MQ=255)

              tggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACtttt                                                                              >  1:3653725‑M1/77‑91 (MQ=255)

              aaaGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACtttt                                                                              <  1:426982/91‑1 (MQ=255)

              aaaGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACtttt                                                                              <  1:3379473/91‑1 (MQ=255)

               ggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACttttt                                                                             >  1:1807275‑M1/76‑91 (MQ=255)

               ggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACttttt                                                                             >  1:2416667‑M1/76‑91 (MQ=255)

               ggtaaaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACttttt                                                                             >  1:3799098‑M1/76‑91 (MQ=255)

                aGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTc                                                                            >  1:736419/1‑91 (MQ=255)

                   aaggttcagcattcgttcgttcaaaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACTTTTTCAcc                                                                         >  1:3985818‑M1/72‑91 (MQ=255)

                    ttCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCa                                                                        >  1:880541/1‑91 (MQ=255)

                     tCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAg                                                                       <  1:1395243/91‑1 (MQ=255)

                      cATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGc                                                                      <  1:2286938/91‑1 (MQ=255)

                      cATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGc                                                                      <  1:2286954/91‑1 (MQ=255)

                      cATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACCTTTTCACCAGc                                                                      <  1:845483/91‑1 (MQ=255)

                       aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                     >  1:2093994/1‑91 (MQ=255)

                       aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                     >  1:2987440/1‑91 (MQ=255)

                         tATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGctct                                                                   >  1:82093/1‑91 (MQ=255)

                         tATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGctct                                                                   >  1:82094/1‑91 (MQ=255)

                          aTCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTa                                                                  <  1:1269565/91‑1 (MQ=255)

                            ccATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTaaa                                                                >  1:1738442/1‑91 (MQ=255)

                            ccATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTaaa                                                                <  1:571222/91‑1 (MQ=255)

                              aTAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACg                                                              <  1:2195044/91‑1 (MQ=255)

                              aTAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACg                                                              <  1:2196861/91‑1 (MQ=255)

                                aaaTACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGtt                                                            <  1:1821801/91‑1 (MQ=255)

                                    aCATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtct                                                        >  1:3934207/1‑91 (MQ=255)

                                    aCATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtct                                                        >  1:1316989/1‑91 (MQ=255)

                                     cATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtctc                                                       >  1:498501/1‑91 (MQ=255)

                                     cATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtctc                                                       >  1:1026842/1‑91 (MQ=255)

                                     cATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtctc                                                       >  1:185988/1‑91 (MQ=255)

                                       tGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCtt                                                     >  1:493516/1‑91 (MQ=255)

                                        gATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTg                                                    >  1:951810/1‑91 (MQ=255)

                                        gATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTg                                                    >  1:2494624/1‑91 (MQ=255)

                                            aTCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAAtt                                                >  1:2931842/1‑91 (MQ=255)

                                            aTCTCCGTCAGCATATAAATATTGCATGCGACGATTTCCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAAtt                                                >  1:3496975/1‑91 (MQ=255)

                                               tcCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCa                                             <  1:2902568/91‑1 (MQ=255)

                                                ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                            <  1:977317/91‑1 (MQ=255)

                                                ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                            <  1:1173293/91‑1 (MQ=255)

                                                ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                            <  1:1316584/91‑1 (MQ=255)

                                                ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                            >  1:2358230/1‑91 (MQ=255)

                                                 cGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTCCAACTTTTTCACCAGCTCTAAACGTTTTCACTTGAATTGCAcc                                           >  1:4149352/1‑91 (MQ=255)

                                                     aGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGtt                                       <  1:1638590/91‑1 (MQ=255)

                                                      gCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTc                                      <  1:145328/91‑1 (MQ=255)

                                                      gCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTc                                      >  1:2430316/1‑91 (MQ=255)

                                                       cATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCt                                     >  1:694408/1‑91 (MQ=255)

                                                       cATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCt                                     >  1:785817/1‑91 (MQ=255)

                                                       cATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCt                                     >  1:1150138/1‑91 (MQ=255)

                                                        atatAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCtt                                    >  1:2217344/1‑91 (MQ=255)

                                                        atatAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCtt                                    >  1:320889/1‑91 (MQ=255)

                                                         tataAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTa                                   >  1:933855/1‑91 (MQ=255)

                                                              atatTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTa                              <  1:153979/91‑1 (MQ=255)

                                                                atTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACg                            <  1:1139637/91‑1 (MQ=255)

                                                                atTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACg                            >  1:72194/1‑91 (MQ=255)

                                                                 ttGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGt                           >  1:4110839/1‑91 (MQ=255)

                                                                 ttGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGt                           <  1:1835369/91‑1 (MQ=255)

                                                                  tGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTa                          <  1:1986770/91‑1 (MQ=255)

                                                                   gCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTaa                         >  1:596496/1‑91 (MQ=255)

                                                                     attcaagagaaaacgtttagaGCTGGTGAAAAAGTTGAACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAAtt                       <  1:1095054‑M1/70‑1 (MQ=255)

                                                                     aTGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAAtt                       >  1:4129422/1‑91 (MQ=255)

                                                                      ttcaagagaaaacgtttagaGCTGGTGAAAAAGTTGAACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAAttt                      <  1:2175989‑M1/71‑1 (MQ=255)

                                                                        cgacgaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTg                    >  1:1425837/1‑91 (MQ=255)

                                                                            gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                <  1:3599399/91‑1 (MQ=255)

                                                                            gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                <  1:474074/91‑1 (MQ=255)

                                                                            gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTAGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                <  1:3303315/91‑1 (MQ=255)

                                                                             aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga               >  1:3421697/1‑91 (MQ=255)

                                                                             aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga               >  1:1379642/1‑91 (MQ=255)

                                                                             aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga               >  1:435790/1‑91 (MQ=255)

                                                                              ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa              >  1:491773/1‑91 (MQ=255)

                                                                              ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa              >  1:2684300/1‑91 (MQ=255)

                                                                              ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa              >  1:941423/1‑91 (MQ=255)

                                                                               tttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaac             >  1:2859041/1‑91 (MQ=255)

                                                                                ttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGaacgaacg            >  1:1021975/1‑91 (MQ=255)

                                                                                 tCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAacgaacga           >  1:3427036/1‑91 (MQ=255)

                                                                                 tCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAacgaacga           <  1:954535/91‑1 (MQ=255)

                                                                                     tCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGc       <  1:669316/91‑1 (MQ=255)

                                                                                       aTTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTg     <  1:928126/91‑1 (MQ=255)

                                                                                       aTTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTg     >  1:3113591/1‑91 (MQ=255)

                                                                                          GCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAAc  <  1:865688‑M1/91‑1 (MQ=255)

AGTTCTGTTTGTTCAAAGCTTTCATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAAC  >  USA300TCH1516_ALE/1645288‑1645468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.