BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1645378 =	118 (1.200)	17 (0.190)	8/148	NT	13.8%	coding (188/558 nt)	efp	Elongation factor P
*	?	USA300TCH1516_ALE	1645401 =	103 (1.130)	17 (0.190)	8/148	NT	13.8%	coding (165/558 nt)	efp	Elongation factor P

Only 100 of 154 total aligned reads displayed.

ATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTACATGTTG  >  USA300TCH1516_ALE/1645311‑1645490

aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                                           >  1:2987440/1‑91 (MQ=255)

aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                                           >  1:1149127/1‑91 (MQ=255)

aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                                           >  1:2093994/1‑91 (MQ=255)

aTTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGct                                                                                           >  1:1338126/1‑91 (MQ=255)

  tATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGctct                                                                                         >  1:82094/1‑91 (MQ=255)

  tATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGctct                                                                                         >  1:82093/1‑91 (MQ=255)

   aTCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTa                                                                                        <  1:1269471/91‑1 (MQ=255)

   aTCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTa                                                                                        <  1:1269565/91‑1 (MQ=255)

     ccATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTaaa                                                                                      >  1:2555482/1‑91 (MQ=255)

     ccATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTaaa                                                                                      >  1:1739299/1‑91 (MQ=255)

     ccATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTaaa                                                                                      >  1:1738442/1‑91 (MQ=255)

       aTAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACg                                                                                    <  1:2195044/91‑1 (MQ=255)

       aTAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACg                                                                                    <  1:2196861/91‑1 (MQ=255)

             aCATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtct                                                                              >  1:1316989/1‑91 (MQ=255)

             aCATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtct                                                                              >  1:3934207/1‑91 (MQ=255)

             aCATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtct                                                                              >  1:1571193/1‑91 (MQ=255)

              cATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtctc                                                                             >  1:496755/1‑91 (MQ=255)

              cATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTtctc                                                                             >  1:1026842/1‑91 (MQ=255)

               aTGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTctct                                                                            >  1:3424355/1‑91 (MQ=255)

                tGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCtt                                                                           >  1:493516/1‑91 (MQ=255)

                 gATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTg                                                                          >  1:951810/1‑91 (MQ=255)

                   aaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagagctggttcaactttttcaccagcTCTAAACGTTTTCTCTTGaa                                                                        <  1:2175989‑M2/20‑1 (MQ=255)

                   aaattacgtaatttaagaactggtgcaattcaagagaaaacgtttagaGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGaa                                                                        >  1:2176508‑M1/49‑91 (MQ=255)

                    aattacgtaatttaagaactggtgcaattcaagagaaaacgtttagagctggttcaactttttcaccagcTCTAAACGTTTTCTCTTGAAt                                                                       <  1:1095054‑M2/21‑1 (MQ=255)

                     aTCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAAtt                                                                      >  1:2931842/1‑91 (MQ=255)

                     aTCTCCGTCAGCATATAAATATTGCATGCGACGATTTCCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAAtt                                                                      >  1:3496975/1‑91 (MQ=255)

                     aTCTCCGTCAGCATATAAATATTGCATGCGACGACTTACAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAAtt                                                                      >  1:3496968/1‑91 (MQ=255)

                        tcCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCa                                                                   >  1:664684/1‑91 (MQ=255)

                         ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                                                  >  1:2358230/1‑91 (MQ=255)

                         ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                                                  <  1:977317/91‑1 (MQ=255)

                         ccGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAc                                                                  <  1:1173293/91‑1 (MQ=255)

                          gtaatttaagagctggtgcaattcaagagaaaacgtttagaGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAcc                                                                 >  1:598547‑M1/42‑91 (MQ=255)

                          cGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCAcc                                                                 <  1:4041954/91‑1 (MQ=255)

                            tCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAg                                                               <  1:71040/91‑1 (MQ=255)

                             cAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGt                                                              <  1:523816/91‑1 (MQ=255)

                              aGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGtt                                                             <  1:1638590/91‑1 (MQ=255)

                               gCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTc                                                            >  1:2430316/1‑91 (MQ=255)

                               gCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTc                                                            <  1:145328/91‑1 (MQ=255)

                                cATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCt                                                           >  1:1150138/1‑91 (MQ=255)

                                cATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCt                                                           >  1:785817/1‑91 (MQ=255)

                                 atatAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCtt                                                          >  1:321062/1‑91 (MQ=255)

                                 atatAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCtt                                                          >  1:2217344/1‑91 (MQ=255)

                                    taAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTaaa                                                       <  1:749814/91‑1 (MQ=255)

                                    taAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTaaa                                                       >  1:1816760/1‑91 (MQ=255)

                                          ttGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGt                                                 <  1:1835369/91‑1 (MQ=255)

                                          ttGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGt                                                 <  1:1530877/91‑1 (MQ=255)

                                            gCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTaa                                               >  1:596496/1‑91 (MQ=255)

                                              attcaagagaaaacgtttagaGCTGGTGAAAAAGTTGAACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAAtt                                             <  1:1095054‑M1/70‑1 (MQ=255)

                                              aTGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAAtt                                             >  1:4129422/1‑91 (MQ=255)

                                                 cgacgaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTg                                          >  1:1425837/1‑91 (MQ=255)

                                                 cgacgaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTg                                          <  1:1912597/91‑1 (MQ=255)

                                                  gacgaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTga                                         <  1:1197766/91‑1 (MQ=255)

                                                   acgaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaa                                        <  1:2728790/91‑1 (MQ=255)

                                                     gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                                      <  1:474074/91‑1 (MQ=255)

                                                     gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                                      <  1:3599399/91‑1 (MQ=255)

                                                     gaTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTAGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacg                                      <  1:3303315/91‑1 (MQ=255)

                                                      aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga                                     >  1:435789/1‑91 (MQ=255)

                                                      aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga                                     >  1:3421697/1‑91 (MQ=255)

                                                      aTTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacga                                     >  1:3958195/1‑91 (MQ=255)

                                                       ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa                                    >  1:941423/1‑91 (MQ=255)

                                                       ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa                                    >  1:941194/1‑91 (MQ=255)

                                                       ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa                                    >  1:2267943/1‑91 (MQ=255)

                                                       ttttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaa                                    >  1:2684300/1‑91 (MQ=255)

                                                        tttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaac                                   >  1:2859041/1‑91 (MQ=255)

                                                        tttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTgaacgaac                                   <  1:1841891/91‑1 (MQ=255)

                                                         ttCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGaacgaacg                                  >  1:1021975/1‑91 (MQ=255)

                                                          tCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAacgaacga                                 <  1:954535/91‑1 (MQ=255)

                                                             aTCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTGTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATg                              <  1:4152079/91‑1 (MQ=255)

                                                              tCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGc                             <  1:669316/91‑1 (MQ=255)

                                                                agagctggtgaaaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTg                           >  1:1391853‑M2/27‑91 (MQ=255)

                                                                aTTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAATGAACGAATGCTg                           <  1:3172621/91‑1 (MQ=255)

                                                                aTTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTg                           <  1:928126/91‑1 (MQ=255)

                                                                  tGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGaa                         <  1:2940297/91‑1 (MQ=255)

                                                                   GCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAAc                        <  1:865688‑M1/91‑1 (MQ=255)

                                                                     TGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCt                      >  1:4010456‑M1/1‑91 (MQ=255)

                                                                      ggtgaaaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCtt                     >  1:3985982‑M2/21‑91 (MQ=255)

                                                                      GGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCtt                     >  1:1388478‑M1/1‑91 (MQ=255)

                                                                       GTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCttt                    >  1:446948‑M1/1‑91 (MQ=255)

                                                                        TTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTa                   >  1:200085‑M1/1‑91 (MQ=255)

                                                                         tCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAc                  >  1:606142/1‑91 (MQ=255)

                                                                         tCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAc                  >  1:606600/1‑91 (MQ=255)

                                                                          cAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAcc                 <  1:4127207/91‑1 (MQ=255)

                                                                          cAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAcc                 <  1:2347760/91‑1 (MQ=255)

                                                                          aaaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAcc                 >  1:1807275‑M2/17‑91 (MQ=255)

                                                                          aaaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAcc                 >  1:3799098‑M2/17‑91 (MQ=255)

                                                                          aaaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTAcc                 >  1:2416668‑M2/17‑91 (MQ=255)

                                                                           aaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCa                >  1:2829499‑M2/16‑91 (MQ=255)

                                                                           aaaagttgaaccagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCa                >  1:2829603‑M2/16‑91 (MQ=255)

                                                                           aaCTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCa                <  1:3205224/91‑1 (MQ=255)

                                                                            aCTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAg               >  1:2500373/1‑91 (MQ=255)

                                                                            aCTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAg               <  1:3560801/91‑1 (MQ=255)

                                                                             cTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAgg              <  1:2842056/91‑1 (MQ=255)

                                                                              tttttCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGc             >  1:3697099/1‑91 (MQ=255)

                                                                                  tCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTa         >  1:565170/1‑91 (MQ=255)

                                                                                  tCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTa         >  1:3065377/1‑91 (MQ=255)

                                                                                   cACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTAc        <  1:488888/91‑1 (MQ=255)

                                                                                   cACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTAc        <  1:4055791/91‑1 (MQ=255)

                                                                                      cagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTACATg     >  1:3792758‑M2/5‑91 (MQ=255)

                                                                                      cagcTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTACATg     <  1:2533353‑M2/87‑1 (MQ=255)

                                                                                         cTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTACATGTTg  >  1:3060085‑M2/2‑91 (MQ=255)

ATTATCCATAAATACATGATTATCTCCGTCAGCATATAAATATTGCATGCGACGATTTTCAATCATTGCTGGTTCAACTTTTTCACCAGCTCTAAACGTTTTCTCTTGAATTGCACCAGTTCTTAAATTACGTAATTTTGAACGAACGAATGCTGAACCTTTACCAGGCTTTACATGTTG  >  USA300TCH1516_ALE/1645311‑1645490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.