BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1682523	130 (1.320)	8 (0.090)	5/140	NT	6.3%	intergenic (‑268/+36)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1682539	124 (1.440)	8 (0.090)	5/140	NT	6.3%	intergenic (‑284/+20)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein

Only 100 of 184 total aligned reads displayed.

CTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACT  >  USA300TCH1516_ALE/1682433‑1682613

cTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCA                                                                                            >  1:1938191‑M1/1‑91 (MQ=255)

cTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCA                                                                                            >  1:85612‑M1/1‑91 (MQ=255)

 tAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCaa                                                                                           >  1:501209/1‑91 (MQ=255)

 tAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCaa                                                                                           <  1:1515439/91‑1 (MQ=255)

  aaTCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAAc                                                                                          <  1:2373652/91‑1 (MQ=255)

    tCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTa                                                                                        <  1:3165821/91‑1 (MQ=255)

    tCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTa                                                                                        <  1:1384338/91‑1 (MQ=255)

         tttttGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCAtt                                                                                   <  1:1813026/91‑1 (MQ=255)

          ttttGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTa                                                                                  >  1:2543048/1‑91 (MQ=255)

             tGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGa                                                                               >  1:1458968/1‑91 (MQ=255)

             tGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGa                                                                               >  1:209505/1‑91 (MQ=255)

               cTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATa                                                                             >  1:4055892/1‑91 (MQ=255)

               cTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATa                                                                             >  1:4112558/1‑91 (MQ=255)

               cTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATa                                                                             >  1:1135486/1‑91 (MQ=255)

                tGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAg                                                                            >  1:1422877/1‑91 (MQ=255)

                tGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAg                                                                            >  1:566544/1‑91 (MQ=255)

                 gTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGt                                                                           >  1:2385256‑M2/1‑90 (MQ=255)

                  tAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtg                                                                          >  1:662937‑M2/1‑89 (MQ=255)

                  tAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtg                                                                          <  1:3375716‑M2/91‑3 (MQ=255)

                  tAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtg                                                                          >  1:2719278‑M2/1‑89 (MQ=255)

                     tttAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgctt                                                                       >  1:2001997‑M2/1‑86 (MQ=255)

                      ttAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCActatcgtaatggtagttgcttg                                                                      <  1:403112‑M1/91‑23 (MQ=255)

                      ttAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgcttg                                                                      >  1:764869‑M2/1‑85 (MQ=255)

                       tAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCActatcgtaatggtagttgcttgt                                                                     <  1:884473‑M1/91‑24 (MQ=255)

                       tAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCActatcgtaatggtagttgcttgt                                                                     <  1:884351‑M1/91‑24 (MQ=255)

                       tAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgcttgt                                                                     >  1:2859940‑M2/1‑84 (MQ=255)

                       tAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgcttgt                                                                     >  1:2859732‑M2/1‑84 (MQ=255)

                        aaaTAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCActatcgtaatggtagttgcttgtt                                                                    <  1:892870‑M1/91‑25 (MQ=255)

                              cTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaa                                                              >  1:3304618/1‑91 (MQ=255)

                                 atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                           <  1:1828191/91‑1 (MQ=255)

                                 atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                           >  1:1381452/1‑91 (MQ=255)

                                  tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                          >  1:397676/1‑91 (MQ=255)

                                   atTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtt                                                         >  1:2287633/1‑91 (MQ=255)

                                     ttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                       <  1:949302/91‑1 (MQ=255)

                                     ttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                       >  1:1919799/1‑91 (MQ=255)

                                      tctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttga                                                      >  1:2613835/1‑89 (MQ=255)

                                      tctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTta                                                      >  1:2545289/1‑91 (MQ=255)

                                        tcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtata                                                    >  1:2221565/1‑91 (MQ=255)

                                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                   <  1:3799045/91‑1 (MQ=255)

                                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                   >  1:3515816/1‑91 (MQ=255)

                                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                   <  1:3464272/91‑1 (MQ=255)

                                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                   <  1:101816/91‑1 (MQ=255)

                                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                   <  1:99863/91‑1 (MQ=255)

                                            aaaaTACTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTg                                                <  1:4077509/91‑1 (MQ=255)

                                             aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                               >  1:2431239/1‑91 (MQ=255)

                                                 tctcTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTg                                           >  1:3812171/1‑91 (MQ=255)

                                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                          >  1:1166312/1‑91 (MQ=255)

                                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                          <  1:803998/91‑1 (MQ=255)

                                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                          >  1:3737559/1‑91 (MQ=255)

                                                   tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                         >  1:3069281/1‑91 (MQ=255)

                                                   tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                         >  1:3350287/1‑91 (MQ=255)

                                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGtt                                        >  1:106839/1‑91 (MQ=255)

                                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTAAAAAAAGTTTATAATTGTTTTGGtt                                        >  1:3873716/1‑91 (MQ=255)

                                                     tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGttt                                       >  1:2564974/1‑91 (MQ=255)

                                                       tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                     <  1:102940/91‑1 (MQ=255)

                                                       tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                     <  1:2893811/91‑1 (MQ=255)

                                                       tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                     <  1:2761886/91‑1 (MQ=255)

                                                         ttttttAATTTTTCTTAACGTAAAAAAACTAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                   <  1:3330527/91‑1 (MQ=255)

                                                         ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                   <  1:2829607/91‑1 (MQ=255)

                                                         ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                   <  1:3705606/91‑1 (MQ=255)

                                                          tttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTa                                  >  1:4127164/1‑91 (MQ=255)

                                                          tttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTa                                  >  1:4125382/1‑91 (MQ=255)

                                                           ttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaa                                 <  1:4006863/91‑1 (MQ=255)

                                                            tttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaa                                >  1:464724/1‑91 (MQ=255)

                                                             ttagtttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaaa                               <  1:3216116/87‑1 (MQ=255)

                                                              tAATTTTTCTTAACGT‑AAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAtt                             >  1:3141411/1‑91 (MQ=255)

                                                               aaTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAtt                             >  1:874040/1‑91 (MQ=255)

                                                                aTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAttt                            >  1:3163577/1‑91 (MQ=255)

                                                                 tttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTc                           <  1:2707646/91‑1 (MQ=255)

                                                                 tttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTc                           <  1:420336/91‑1 (MQ=255)

                                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                          >  1:2976535/1‑91 (MQ=255)

                                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                          >  1:2979262/1‑91 (MQ=255)

                                                                   tttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTg                         <  1:3262220/91‑1 (MQ=255)

                                                                    ttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGa                        <  1:1730695/91‑1 (MQ=255)

                                                                     tCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGAc                       <  1:723564/91‑1 (MQ=255)

                                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCat                    <  1:3602257/91‑1 (MQ=255)

                                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCat                    <  1:3601858/91‑1 (MQ=255)

                                                                         aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                   <  1:402022/91‑1 (MQ=255)

                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATATTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAGAATTTCTGACCatat                  <  1:3542758/91‑1 (MQ=255)

                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                  >  1:1889867/1‑91 (MQ=255)

                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                  <  1:966552/91‑1 (MQ=255)

                                                                           cGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATc                 <  1:2200940/91‑1 (MQ=255)

                                                                            gTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCa                <  1:2024969/91‑1 (MQ=255)

                                                                             tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt               <  1:1740892/91‑1 (MQ=255)

                                                                               aaaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAc             >  1:803019/1‑91 (MQ=255)

                                                                                aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAcc            >  1:132401/1‑91 (MQ=255)

                                                                                 aaaaGAAGCActatcgtaatggtagttgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttat           <  1:3457911‑M1/91‑82 (MQ=255)

                                                                                 aaaaCAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttat           <  1:641260‑M2/91‑66 (MQ=255)

                                                                                   aaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCAtt         >  1:4040785/1‑91 (MQ=255)

                                                                                    aCAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttattta        <  1:635980‑M2/91‑69 (MQ=255)

                                                                                    aCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg        <  1:2818033/91‑1 (MQ=255)

                                                                                     cAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttatttaa       <  1:262996‑M2/91‑70 (MQ=255)

                                                                                      aaGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAt      >  1:3031327/1‑91 (MQ=255)

                                                                                       aGCActatcgtaatggtagttgcttgtttttttacgttaagaacaattaaaaaacaaagagaatttttcgagaaatattagttatttaaat     <  1:4145843‑M1/91‑88 (MQ=255)

                                                                                       aGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttatttaaat     <  1:633110‑M2/91‑72 (MQ=255)

                                                                                       aGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt     >  1:2234486/1‑91 (MQ=255)

                                                                                       aGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt     <  1:2973528/91‑1 (MQ=255)

                                                                                         cActatcgtaatggtagttgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttatttaaatta   <  1:3375716‑M1/91‑90 (MQ=255)

                                                                                         cAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc   <  1:1464304/91‑1 (MQ=255)

                                                                                          aaCTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt  >  1:1604168/1‑91 (MQ=255)

CTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACT  >  USA300TCH1516_ALE/1682433‑1682613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.