BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1682523	130 (1.320)	8 (0.090)	5/140	NT	6.3%	intergenic (‑268/+36)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1682539	124 (1.440)	8 (0.090)	5/140	NT	6.3%	intergenic (‑284/+20)	USA300HOU_RS08380/USA300HOU_RS08385	PhoH‑like protein/hypothetical protein

Only 100 of 164 total aligned reads displayed.

TGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAT  >  USA300TCH1516_ALE/1682449‑1682628

tGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAg                                                                                           >  1:1422877/1‑91 (MQ=255)

tGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAg                                                                                           >  1:778774/1‑91 (MQ=255)

 gTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGt                                                                                          >  1:2385256‑M2/1‑90 (MQ=255)

  tAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtg                                                                                         >  1:2719278‑M2/1‑89 (MQ=255)

  tAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtg                                                                                         >  1:662937‑M2/1‑89 (MQ=255)

    aTTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTGTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgct                                                                                       <  1:4145843‑M2/91‑5 (MQ=255)

     tttAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgctt                                                                                      >  1:2001997‑M2/1‑86 (MQ=255)

       tAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgcttgt                                                                                    >  1:2859940‑M2/1‑84 (MQ=255)

          aTAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGtgcttctttt                                                                                 <  1:3457911‑M2/91‑11 (MQ=255)

            aaCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCa                                                                               <  1:4073249/91‑1 (MQ=255)

             aCTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                              <  1:2741231/91‑1 (MQ=255)

             aCTAATATTTCTCGAAAAATTCTCTGTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                              <  1:3867795/91‑1 (MQ=255)

              cTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaa                                                                             >  1:3304618/1‑91 (MQ=255)

                 atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                                          >  1:1381452/1‑91 (MQ=255)

                 atatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaaa                                                                          <  1:1828191/91‑1 (MQ=255)

                  tatTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAt                                                                         >  1:397676/1‑91 (MQ=255)

                     ttCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttt                                                                      <  1:950955/91‑1 (MQ=255)

                      tctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAAtttga                                                                     >  1:2613835/1‑89 (MQ=255)

                      tctcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTta                                                                     <  1:3570595/91‑1 (MQ=255)

                        tcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtata                                                                   >  1:3365624/1‑91 (MQ=255)

                        tcGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTtata                                                                   >  1:2221565/1‑91 (MQ=255)

                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                                  <  1:3799045/91‑1 (MQ=255)

                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                                  <  1:101816/91‑1 (MQ=255)

                         cGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATaa                                                                  <  1:99863/91‑1 (MQ=255)

                            aaaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTg                                                               >  1:181959/1‑91 (MQ=255)

                             aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                              <  1:3237761/91‑1 (MQ=255)

                             aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGt                                                              >  1:2429840/1‑91 (MQ=255)

                               aTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGttt                                                            <  1:1175935/91‑1 (MQ=255)

                                 tctcTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTg                                                          >  1:3812171/1‑91 (MQ=255)

                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                                         >  1:1166312/1‑91 (MQ=255)

                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                                         >  1:3737559/1‑91 (MQ=255)

                                  ctctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTgg                                                         <  1:803998/91‑1 (MQ=255)

                                   tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGt                                                        >  1:3350242/1‑91 (MQ=255)

                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGtt                                                       >  1:3377456/1‑91 (MQ=255)

                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGtt                                                       >  1:106839/1‑91 (MQ=255)

                                     tttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGttt                                                      >  1:2564974/1‑91 (MQ=255)

                                       tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                                    <  1:2893811/91‑1 (MQ=255)

                                       tGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAg                                                    <  1:102940/91‑1 (MQ=255)

                                         ttttttAATTTTTCTTAACGTAAAAAAACTAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                  <  1:3330527/91‑1 (MQ=255)

                                         ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                  <  1:2829607/91‑1 (MQ=255)

                                         ttttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCt                                                  <  1:3705606/91‑1 (MQ=255)

                                          tttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTa                                                 >  1:4125362/1‑91 (MQ=255)

                                          tttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTa                                                 >  1:4125382/1‑91 (MQ=255)

                                           ttttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaa                                                <  1:4007031/91‑1 (MQ=255)

                                            tttAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaa                                               >  1:464724/1‑91 (MQ=255)

                                             ttagtttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTaaaa                                              <  1:3216116/87‑1 (MQ=255)

                                              tAATTTTTCTTAACGT‑AAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAtt                                            >  1:3141411/1‑91 (MQ=255)

                                               aaTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAtt                                            >  1:874040/1‑91 (MQ=255)

                                                aTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAAttt                                           >  1:3163577/1‑91 (MQ=255)

                                                 tttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTc                                          >  1:2155099/1‑91 (MQ=255)

                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                         >  1:2976824/1‑91 (MQ=255)

                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                         >  1:2979262/1‑91 (MQ=255)

                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                         >  1:442057/1‑91 (MQ=255)

                                                    ttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGa                                       <  1:1730695/91‑1 (MQ=255)

                                                    ttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGa                                       <  1:1114823/91‑1 (MQ=255)

                                                     tCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGAc                                      <  1:723564/91‑1 (MQ=255)

                                                     tCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGAc                                      <  1:2693516/91‑1 (MQ=255)

                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCat                                   <  1:3602257/91‑1 (MQ=255)

                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCat                                   <  1:3601858/91‑1 (MQ=255)

                                                         aaCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCata                                  <  1:402022/91‑1 (MQ=255)

                                                          aCGTAAAAAAACAAGCAACTACCATTACGATATTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAGAATTTCTGACCatat                                 <  1:3542758/91‑1 (MQ=255)

                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                                 <  1:966552/91‑1 (MQ=255)

                                                           cGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATc                                <  1:2200973/91‑1 (MQ=255)

                                                           cGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATc                                <  1:3055411/91‑1 (MQ=255)

                                                            gTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCa                               <  1:2019542/91‑1 (MQ=255)

                                                             tAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                              <  1:1740892/91‑1 (MQ=255)

                                                               aaaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAc                            >  1:803019/1‑91 (MQ=255)

                                                               aaaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAc                            <  1:2543902/91‑1 (MQ=255)

                                                                aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAcc                           >  1:3477648/1‑91 (MQ=255)

                                                                aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAcc                           <  1:3133144/91‑1 (MQ=255)

                                                                   aaCAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttattt                        <  1:892870‑M2/91‑68 (MQ=255)

                                                                   aaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCAtt                        >  1:4040785/1‑91 (MQ=255)

                                                                    aCAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttattta                       <  1:884351‑M2/91‑69 (MQ=255)

                                                                    aCAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttattta                       <  1:635980‑M2/91‑69 (MQ=255)

                                                                    aCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTg                       <  1:2818033/91‑1 (MQ=255)

                                                                     cAAGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttatttaa                      <  1:403112‑M2/91‑70 (MQ=255)

                                                                       aGCAACTACCATTACGATAGtgcttgtttttttacgttaagaaaaattaaaaaacaaagagaatttttcgagaaatattagttatttaaat                    <  1:633110‑M2/91‑72 (MQ=255)

                                                                       aGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                    >  1:2234486/1‑91 (MQ=255)

                                                                       aGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGAtt                    <  1:2973528/91‑1 (MQ=255)

                                                                       aGCAACTACCATTACCATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTACCTAAAATTTCTGACCATATCATACCATTGAtt                    >  1:3532399/1‑91 (MQ=255)

                                                                        gCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                   >  1:1906482/1‑91 (MQ=255)

                                                                         cAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                  <  1:1464304/91‑1 (MQ=255)

                                                                           aCTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGGCCATATCATACCATTGATTACtt                <  1:3284574/91‑1 (MQ=255)

                                                                               ccATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATc            >  1:3430073/1‑91 (MQ=255)

                                                                                cATCACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCt           <  1:3267312/91‑1 (MQ=255)

                                                                                 aTTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCtt          >  1:1059773/1‑91 (MQ=255)

                                                                                 aTTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCtt          <  1:213901/91‑1 (MQ=255)

                                                                                  ttACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCttt         <  1:756646/91‑1 (MQ=255)

                                                                                    aCGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTAt       <  1:1524907/91‑1 (MQ=255)

                                                                                    aCGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTAt       <  1:3631481/91‑1 (MQ=255)

                                                                                     cGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATc      <  1:3474567/91‑1 (MQ=255)

                                                                                      gATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCa     <  1:2173460/91‑1 (MQ=255)

                                                                                       aTAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaa    <  1:161789/91‑1 (MQ=255)

                                                                                        tAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaaa   >  1:565788/1‑91 (MQ=255)

                                                                                        tAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaaa   <  1:1618224/91‑1 (MQ=255)

                                                                                        tAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaaa   <  1:2152439/91‑1 (MQ=255)

                                                                                         aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt  >  1:1680896/1‑91 (MQ=255)

                                                                                         aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt  >  1:2144063/1‑91 (MQ=255)

                                                                                         aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt  >  1:2144260/1‑91 (MQ=255)

                                                                                         aGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAt  >  1:2917904/1‑91 (MQ=255)

TGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAAT  >  USA300TCH1516_ALE/1682449‑1682628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.