BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1710808 =	104 (1.060)	9 (0.100)	8/144	NT	8.9%	coding (336/1221 nt)	fic	Adenosine monophosphate‑protein transferase SoFic
*	?	USA300TCH1516_ALE	1710841 =	91 (1.030)	9 (0.100)	8/144	NT	8.9%	coding (303/1221 nt)	fic	Adenosine monophosphate‑protein transferase SoFic

Only 100 of 132 total aligned reads displayed.

AAGTTCTATCTCTTTATATTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAA  >  USA300TCH1516_ALE/1710718‑1710898

    tCTATCTCTTTATATTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTAc                                                                                        <  1:4041155/91‑1 (MQ=255)

     tagaaaaattgatagagcacttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACt                                                                                       >  1:2591800‑M1/86‑91 (MQ=255)

      agaaaaattgatagagcacttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTa                                                                                      >  1:2785530‑M1/85‑91 (MQ=255)

      agaaaaattgatagagcacttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTa                                                                                      <  1:2186253‑M1/7‑1 (MQ=255)

      agaaaaattgatagagcacttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTa                                                                                      <  1:48391‑M1/7‑1 (MQ=255)

      agaaaaattgatagagcacttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTa                                                                                      <  1:48132‑M1/7‑1 (MQ=255)

        tctcTTTATATTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTaaa                                                                                    >  1:2245581/1‑91 (MQ=255)

              tataTTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtt                                                                              <  1:3735024/91‑1 (MQ=255)

              tataTTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtt                                                                              <  1:1261410/91‑1 (MQ=255)

               atatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTTCTAAATACAttt                                                                             <  1:3181681/91‑1 (MQ=255)

               atatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAttt                                                                             <  1:2877208/91‑1 (MQ=255)

               atatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAttt                                                                             <  1:641315/91‑1 (MQ=255)

               atatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAttt                                                                             >  1:1499601/1‑91 (MQ=255)

                tatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtttt                                                                            <  1:1578019/91‑1 (MQ=255)

                tatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtttt                                                                            >  1:2512968/1‑91 (MQ=255)

                tatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtttt                                                                            >  1:387807/1‑91 (MQ=255)

                tatTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACAtttt                                                                            <  1:1792369/91‑1 (MQ=255)

                  ttGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCa                                                                          <  1:2391080/91‑1 (MQ=255)

                   tGATCCACGAGGCCTCTGAACTTAAGAATTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTcga                                                                         <  1:2924311/91‑3 (MQ=255)

                    gATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAAt                                                                        >  1:965222/1‑91 (MQ=255)

                     aTCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAAtt                                                                       <  1:1981160/91‑1 (MQ=255)

                      tCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAAttt                                                                      >  1:2487459/1‑91 (MQ=255)

                       ccACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTc                                                                     >  1:1805874/1‑91 (MQ=255)

                        cACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCa                                                                    >  1:4025720/1‑91 (MQ=255)

                        cACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCa                                                                    >  1:3609464/1‑91 (MQ=255)

                         ttaattctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCAt                                                                   >  1:843286‑M1/66‑91 (MQ=255)

                         aCGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCAt                                                                   <  1:177546/91‑1 (MQ=255)

                            attctttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAg                                                                >  1:3016210‑M1/63‑91 (MQ=255)

                            aGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAg                                                                >  1:67323/1‑91 (MQ=255)

                            aGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAg                                                                >  1:1937278/1‑91 (MQ=255)

                              gCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTa                                                              >  1:3062149/1‑91 (MQ=255)

                              gCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTCCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTa                                                              >  1:3312688/1‑91 (MQ=255)

                               ccTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTAc                                                             <  1:3571375/91‑1 (MQ=255)

                                tttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAGTACt                                                            >  1:84097‑M1/59‑91 (MQ=255)

                                 ttaccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAGTACtt                                                           >  1:3702591‑M1/58‑91 (MQ=255)

                                 tctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACtt                                                           <  1:1503285/91‑1 (MQ=255)

                                 tctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACtt                                                           <  1:1651457/91‑1 (MQ=255)

                                  ctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                          <  1:245026/91‑1 (MQ=255)

                                  ctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                          >  1:664321/1‑91 (MQ=255)

                                   tGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTg                                                         <  1:2636060/91‑1 (MQ=255)

                                      aCTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTaa                                                      <  1:3001314/91‑1 (MQ=255)

                                        ttAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAAtt                                                    <  1:3598084/91‑1 (MQ=255)

                                          aaGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCa                                                  <  1:1326487/91‑1 (MQ=255)

                                          aaGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCa                                                  <  1:1060212/91‑1 (MQ=255)

                                            gAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATc                                                <  1:1026209/91‑1 (MQ=255)

                                             aaaTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCg                                               <  1:425298/91‑1 (MQ=255)

                                               aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                             <  1:357137/91‑1 (MQ=255)

                                               aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                             <  1:987412/91‑1 (MQ=255)

                                               aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                             <  1:1567181/91‑1 (MQ=255)

                                                ttCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAtt                                            <  1:110843/91‑1 (MQ=255)

                                                 tCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATta                                           >  1:2669737/1‑91 (MQ=255)

                                                 tCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATta                                           >  1:1019201/1‑91 (MQ=255)

                                                    gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATtaata                                        >  1:2256766/1‑91 (MQ=255)

                                                    gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATtaata                                        >  1:2480201/1‑91 (MQ=255)

                                                    gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGT‑ATTCATCGATtaataa                                       <  1:1292461/91‑1 (MQ=255)

                                                      tGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATaaa                                      >  1:1290127/1‑91 (MQ=255)

                                                          tGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAt                                  <  1:4046412/91‑1 (MQ=255)

                                                          tGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAt                                  <  1:1509569/91‑1 (MQ=255)

                                                           ggTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAtt                                 <  1:4127013/91‑1 (MQ=255)

                                                           ggTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAtt                                 <  1:952771/91‑1 (MQ=255)

                                                            gTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTa                                <  1:866202/91‑1 (MQ=255)

                                                            gTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTa                                >  1:88318/1‑91 (MQ=255)

                                                            gTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTa                                >  1:535157/1‑91 (MQ=255)

                                                             ttATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaa                               <  1:3249672/91‑1 (MQ=255)

                                                             ttATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaa                               <  1:2239339/91‑1 (MQ=255)

                                                              tATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaaa                              >  1:503613/1‑91 (MQ=255)

                                                                tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                            <  1:2243159/91‑1 (MQ=255)

                                                                tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                            >  1:539602/1‑91 (MQ=255)

                                                                tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                            >  1:2664126/1‑91 (MQ=255)

                                                                tttAACGCATGCGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                            <  1:3756359/91‑1 (MQ=255)

                                                                  tAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAatat                          >  1:3011879/1‑91 (MQ=255)

                                                                  tAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAatat                          <  1:2874956/91‑1 (MQ=255)

                                                                   aaCGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATAtt                         <  1:374832/91‑1 (MQ=255)

                                                                   aaCGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATAtt                         <  1:1968241/91‑1 (MQ=255)

                                                                     cGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCAATAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGt                       >  1:3301227/1‑91 (MQ=255)

                                                                       cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                     <  1:1010901/91‑1 (MQ=255)

                                                                       cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                     >  1:879879/1‑91 (MQ=255)

                                                                       cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                     <  1:3632157/91‑1 (MQ=255)

                                                                         tgtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtctc                   <  1:4002754/91‑1 (MQ=255)

                                                                         tgtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtctc                   >  1:1411109/1‑91 (MQ=255)

                                                                         tgtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtctc                   <  1:2444337/91‑1 (MQ=255)

                                                                          gtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTctct                  <  1:1429012/91‑1 (MQ=255)

                                                                          gtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTctct                  <  1:2221991/91‑1 (MQ=255)

                                                                           tgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTa                 >  1:60929/1‑91 (MQ=255)

                                                                           tgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTa                 >  1:752014/1‑91 (MQ=255)

                                                                           tgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTa                 >  1:60909/1‑91 (MQ=255)

                                                                             cAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTCCTCTAGc               >  1:2073678/1‑91 (MQ=255)

                                                                               aTCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTg             >  1:3186272/1‑91 (MQ=255)

                                                                                 ctctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCa           <  1:2621806/91‑1 (MQ=255)

                                                                                  tctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCat          <  1:1114563/91‑1 (MQ=255)

                                                                                   ctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGCTCTCTAGCTGCata         >  1:3739008/1‑91 (MQ=255)

                                                                                     tGTTTAGTACTAAATACATTTTCAATTTCATTAGTACCTTGTAATTCATCGCTTAATAAATCATTCAAATATTGTTCTCTAGCTGCATATg       >  1:3855839/1‑91 (MQ=255)

                                                                                      gTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATgg      >  1:3553252/1‑91 (MQ=255)

                                                                                        ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa    <  1:307048/91‑1 (MQ=255)

                                                                                        ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa    <  1:307077/91‑1 (MQ=255)

                                                                                        ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa    <  1:307103/91‑1 (MQ=255)

                                                                                        ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa    <  1:3146411/91‑1 (MQ=255)

                                                                                        ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa    >  1:3974228/1‑91 (MQ=255)

                                                                                         tAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaa   >  1:1017498/1‑91 (MQ=255)

                                                                                          AGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaaa  <  1:692704‑M1/91‑1 (MQ=255)

AAGTTCTATCTCTTTATATTGATCCACGAGGCCTCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAA  >  USA300TCH1516_ALE/1710718‑1710898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.