BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1710808 =	104 (1.060)	9 (0.100)	8/144	NT	8.9%	coding (336/1221 nt)	fic	Adenosine monophosphate‑protein transferase SoFic
*	?	USA300TCH1516_ALE	1710841 =	91 (1.030)	9 (0.100)	8/144	NT	8.9%	coding (303/1221 nt)	fic	Adenosine monophosphate‑protein transferase SoFic

Only 100 of 133 total aligned reads displayed.

TCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTCTACTATTA  >  USA300TCH1516_ALE/1710751‑1710931

tctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACtt                                                                                            <  1:1651457/91‑1 (MQ=255)

tctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACtt                                                                                            <  1:1503285/91‑1 (MQ=255)

 taccatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                                                           >  1:2958039‑M1/57‑91 (MQ=255)

 ctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                                                           <  1:245026/91‑1 (MQ=255)

 ctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                                                           >  1:664242/1‑91 (MQ=255)

 ctGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACttt                                                                                           >  1:664321/1‑91 (MQ=255)

  accatatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAGTACTTTg                                                                                          >  1:3488249‑M1/56‑91 (MQ=255)

    catatgcagctagagaacaatattttaatgatttattaatcgatgaattacaaAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTa                                                                                        >  1:3113295‑M1/54‑91 (MQ=255)

     aCTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTaa                                                                                       <  1:3001314/91‑1 (MQ=255)

         aaGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCa                                                                                   <  1:1060212/91‑1 (MQ=255)

           gAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATc                                                                                 <  1:1026209/91‑1 (MQ=255)

            aaaTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCg                                                                                <  1:425298/91‑1 (MQ=255)

              aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                                                              <  1:987412/91‑1 (MQ=255)

              aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                                                              <  1:1567181/91‑1 (MQ=255)

              aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                                                              <  1:357154/91‑1 (MQ=255)

              aTTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAt                                                                              <  1:357137/91‑1 (MQ=255)

               ttCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGAtt                                                                             <  1:110843/91‑1 (MQ=255)

                tCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATta                                                                            >  1:1019201/1‑91 (MQ=255)

                tCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATta                                                                            >  1:2669737/1‑91 (MQ=255)

                   gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATtaata                                                                         >  1:2256766/1‑91 (MQ=255)

                   gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATtaata                                                                         >  1:2480201/1‑91 (MQ=255)

                   gATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGT‑ATTCATCGATtaataa                                                                        <  1:1292461/91‑1 (MQ=255)

                    acaatattttaatgatttattaatccatgaattacaaAGTACTAAATACATTTCCAATTTCATTAGTACTTTGTAATTCATCGATtaataa                                                                        >  1:3866679‑M1/38‑91 (MQ=255)

                     tGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATaaa                                                                       >  1:1290127/1‑91 (MQ=255)

                     tGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATaaa                                                                       >  1:2647618/1‑91 (MQ=255)

                         tGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAt                                                                   <  1:1509569/91‑1 (MQ=255)

                         tGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAt                                                                   <  1:4046412/91‑1 (MQ=255)

                          ggTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAtt                                                                  <  1:952729/91‑1 (MQ=255)

                          ggTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAtt                                                                  <  1:952771/91‑1 (MQ=255)

                          ggTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCAtt                                                                  <  1:4127013/91‑1 (MQ=255)

                           gTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTa                                                                 <  1:866202/91‑1 (MQ=255)

                           gTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTa                                                                 >  1:535157/1‑91 (MQ=255)

                            ttATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaa                                                                <  1:2239339/91‑1 (MQ=255)

                            ttATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaa                                                                <  1:3249672/91‑1 (MQ=255)

                             tATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTaaa                                                               >  1:503613/1‑91 (MQ=255)

                               tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                                                             <  1:2243159/91‑1 (MQ=255)

                               tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                                                             >  1:539602/1‑91 (MQ=255)

                               tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                                                             >  1:2664126/1‑91 (MQ=255)

                               tttAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                                                             <  1:3050784/91‑1 (MQ=255)

                               tttAACGCATGCGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAat                                                             <  1:3756359/91‑1 (MQ=255)

                                 tAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAatat                                                           <  1:2874956/91‑1 (MQ=255)

                                 tAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAatat                                                           >  1:3011879/1‑91 (MQ=255)

                                  aaCGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATAtt                                                          <  1:582060/91‑1 (MQ=255)

                                  aaCGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATAtt                                                          <  1:1968241/91‑1 (MQ=255)

                                    cGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCAATAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGt                                                        >  1:3301227/1‑91 (MQ=255)

                                      cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                                                      <  1:3632844/91‑1 (MQ=255)

                                      cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                                                      <  1:3632157/91‑1 (MQ=255)

                                      cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                                                      >  1:879879/1‑91 (MQ=255)

                                      cATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtc                                                      <  1:1010901/91‑1 (MQ=255)

                                        tgtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTtctc                                                    >  1:1411109/1‑91 (MQ=255)

                                         gtgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTctct                                                   <  1:2221991/91‑1 (MQ=255)

                                          tgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTa                                                  >  1:60909/1‑91 (MQ=255)

                                          tgCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTa                                                  >  1:752014/1‑91 (MQ=255)

                                            cAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTCCTCTAGc                                                >  1:2073678/1‑91 (MQ=255)

                                              aTCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTg                                              >  1:3186272/1‑91 (MQ=255)

                                                ctctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCa                                            <  1:2621806/91‑1 (MQ=255)

                                                 tctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCat                                           <  1:1114563/91‑1 (MQ=255)

                                                  ctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCata                                          >  1:1545139/1‑91 (MQ=255)

                                                  ctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGCTCTCTAGCTGtata                                          >  1:3739126/1‑91 (MQ=255)

                                                  ctTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGCTCTCTAGCTGCata                                          >  1:3739008/1‑91 (MQ=255)

                                                    tacaaagtactaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATg                                        >  1:3113295‑M2/39‑91 (MQ=255)

                                                    tacaaagtactaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATg                                        >  1:1055011‑M2/39‑91 (MQ=255)

                                                    tGTTTAGTACTAAATACATTTTCAATTTCATTAGTACCTTGTAATTCATCGCTTAATAAATCATTCAAATATTGTTCTCTAGCTGCATATg                                        >  1:3855839/1‑91 (MQ=255)

                                                     gTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATgg                                       >  1:3553252/1‑91 (MQ=255)

                                                      caaagtactaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGt                                      >  1:3488249‑M2/37‑91 (MQ=255)

                                                       ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa                                     >  1:3974228/1‑91 (MQ=255)

                                                       ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa                                     <  1:307048/91‑1 (MQ=255)

                                                       ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa                                     <  1:3146411/91‑1 (MQ=255)

                                                       ttAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTa                                     <  1:307077/91‑1 (MQ=255)

                                                        tAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaa                                    >  1:1017498/1‑91 (MQ=255)

                                                        aagtactaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaa                                    >  1:3702591‑M2/35‑91 (MQ=255)

                                                         agtactaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaaa                                   >  1:84097‑M2/34‑91 (MQ=255)

                                                         AGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTaaa                                   <  1:2469747‑M1/91‑1 (MQ=255)

                                                          GTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAg                                  >  1:1083909‑M1/1‑91 (MQ=255)

                                                          GTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAg                                  >  1:571701‑M1/1‑91 (MQ=255)

                                                            ACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGaa                                <  1:3609321‑M1/91‑1 (MQ=255)

                                                            ACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGaa                                >  1:687963‑M1/1‑91 (MQ=255)

                                                             ctaatgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAAt                               >  1:3016210‑M2/30‑91 (MQ=255)

                                                               AAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTa                             <  1:4071273‑M1/91‑1 (MQ=255)

                                                                atgaaattgaaaatgtatttagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTaa                            >  1:843286‑M2/27‑91 (MQ=255)

                                                                    cATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGc                        >  1:1347309/1‑91 (MQ=255)

                                                                    cATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGc                        >  1:1347640/1‑91 (MQ=255)

                                                                      ttttCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGctc                      >  1:1837010/1‑91 (MQ=255)

                                                                       tttCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATCAAGTGctct                     >  1:3967830/1‑91 (MQ=255)

                                                                       tttCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATCAAGTGctct                     >  1:3967864/1‑91 (MQ=255)

                                                                         tCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTAt                   >  1:1953000/1‑91 (MQ=255)

                                                                          cAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATc                  >  1:1972824/1‑91 (MQ=255)

                                                                           aaTTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCa                 <  1:3386368/91‑1 (MQ=255)

                                                                           aaTTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCa                 <  1:1249045/91‑1 (MQ=255)

                                                                           aaTTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCa                 >  1:1995988/1‑91 (MQ=255)

                                                                            aTTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCaa                >  1:86317/1‑91 (MQ=255)

                                                                            aTTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCaa                <  1:1120812/91‑1 (MQ=255)

                                                                             tttCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAAt               >  1:2408106/1‑91 (MQ=255)

                                                                                 aTTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAAttttt           >  1:2235887/1‑91 (MQ=255)

                                                                                   tagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTct         >  1:2785530‑M2/8‑91 (MQ=255)

                                                                                   tagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTct         <  1:2186253‑M2/84‑1 (MQ=255)

                                                                                   tagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTct         <  1:48391‑M2/84‑1 (MQ=255)

                                                                                   tagtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTct         <  1:48132‑M2/84‑1 (MQ=255)

                                                                                    agtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTcta        >  1:2591800‑M2/7‑91 (MQ=255)

                                                                                    agtactTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTcta        >  1:2590333‑M2/7‑91 (MQ=255)

TCTGAACTTAAGAAATTCTGATGCTTGGTTATTTAACGCATGTGCAATCTCTTGTTTAGTACTAAATACATTTTCAATTTCATTAGTACTTTGTAATTCATCGATTAATAAATCATTAAAATATTGTTCTCTAGCTGCATATGGTAAAGAATTAAGTGCTCTATCAATTTTTCTACTATTA  >  USA300TCH1516_ALE/1710751‑1710931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.