New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 183694764 (0.650)6 (0.070) 6/132 NT 9.9% intergenic (+31/+119) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE = 1836967 57 (0.700)intergenic (+51/+99) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 129 total aligned reads displayed.

CTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA  >  USA300TCH1516_ALE/1836857‑1837037
                                                                                          |                                                                                          
cTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAG                                                                                            <  1:936939‑M1/91‑1 (MQ=255)
 ttAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAagaaga                                                                                           <  1:4039096/91‑1 (MQ=255)
   aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACa                                                                                         <  1:3705688/91‑1 (MQ=255)
   aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACa                                                                                         <  1:3705661/91‑1 (MQ=255)
      cAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTg                                                                                      <  1:1184937/91‑1 (MQ=255)
       aaGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatgga                                                                                     <  1:2868583‑M1/91‑8 (MQ=255)
        aGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGa                                                                                    >  1:1372084/1‑91 (MQ=255)
         gTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAt                                                                                   <  1:1649846/91‑1 (MQ=255)
          ttGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAtt                                                                                  >  1:3389042/1‑91 (MQ=255)
           gcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTa                                                                                 >  1:1055685‑M1/67‑91 (MQ=255)
            ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc                                                                                <  1:3892376/91‑1 (MQ=255)
            cataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTAc                                                                                >  1:283216‑M1/66‑91 (MQ=255)
              tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                              <  1:572685/91‑1 (MQ=255)
              tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                              <  1:572159/91‑1 (MQ=255)
              tGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACtt                                                                              <  1:2280809/91‑1 (MQ=255)
               gAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTc                                                                             >  1:442395/1‑91 (MQ=255)
                 aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                                           <  1:1439739/91‑1 (MQ=255)
                 aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                                           <  1:2915854/91‑1 (MQ=255)
                 aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                                           <  1:1207464/91‑1 (MQ=255)
                  tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt                                                                          <  1:1978839/91‑1 (MQ=255)
                   tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                                         >  1:2588458‑M1/59‑91 (MQ=255)
                   tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                                         >  1:2587999‑M1/59‑91 (MQ=255)
                   tgtagtgaaggagtgaacgaaaggtttcatatggagggacaaggaaattaataaggaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                                         >  1:1086943‑M1/59‑91 (MQ=255)
                   aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatg                                                                         <  1:2972479‑M1/91‑20 (MQ=255)
                   aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                                         <  1:614459/91‑1 (MQ=255)
                    gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                        >  1:2413063‑M1/58‑91 (MQ=255)
                    gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                        >  1:2413102‑M1/58‑91 (MQ=255)
                    cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgt                                                                        <  1:1925965‑M1/91‑21 (MQ=255)
                    cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                        <  1:3261916/91‑1 (MQ=255)
                     aaTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtc                                                                       <  1:338960‑M1/91‑22 (MQ=255)
                         gaattattgaatcaaaggtttgatattgagttacaatgaaattaataatgaaAAATTACCAAGAAGACATTGGATTACTTCCATTGcttct                                                                   >  1:1004033‑M1/53‑91 (MQ=255)
                         atggtttcacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttct                                                                   >  1:339524‑M2/5‑86 (MQ=255)
                         aaaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttct                                                                   <  1:1453831‑M1/91‑26 (MQ=255)
                          aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                                  >  1:2171356‑M2/1‑85 (MQ=255)
                           aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                 <  1:3142604‑M2/91‑8 (MQ=255)
                           aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                 >  1:940107‑M2/1‑84 (MQ=255)
                             gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                               >  1:2151144‑M1/49‑91 (MQ=255)
                             gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                               >  1:2250881‑M1/49‑91 (MQ=255)
                             gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                               >  1:2271062‑M1/49‑91 (MQ=255)
                             gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                               >  1:2150600‑M1/49‑91 (MQ=255)
                              ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttggca                                                              <  1:2316820‑M1/91‑31 (MQ=255)
                              ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                              >  1:3647986‑M2/1‑81 (MQ=255)
                                cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                            <  1:2733523‑M2/91‑13 (MQ=255)
                                cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                            <  1:2187874‑M2/91‑13 (MQ=255)
                                cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                            <  1:2015863‑M2/91‑13 (MQ=255)
                                  caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                                          <  1:1438520‑M2/91‑15 (MQ=255)
                                        aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                    >  1:689447/1‑91 (MQ=255)
                                          ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                  >  1:943974/1‑91 (MQ=255)
                                          ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                  <  1:1339208/91‑1 (MQ=255)
                                           tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                 <  1:3261112/91‑1 (MQ=255)
                                           tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                 <  1:223539/91‑1 (MQ=255)
                                           tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAATTTTTCattatt                                                 <  1:3173739/91‑1 (MQ=255)
                                             aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                               <  1:2007053/91‑1 (MQ=255)
                                              cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                              >  1:820204/1‑91 (MQ=255)
                                              cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                              >  1:820834/1‑91 (MQ=255)
                                               ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                             <  1:3015498/91‑1 (MQ=255)
                                                 tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                                           <  1:3068654/91‑1 (MQ=255)
                                                  aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                          <  1:3014567/91‑1 (MQ=255)
                                                     gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                       >  1:1291217/1‑91 (MQ=255)
                                                     gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                       >  1:2491460/1‑91 (MQ=255)
                                                      tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                      >  1:364226/1‑91 (MQ=255)
                                                      tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                      >  1:666024/1‑91 (MQ=255)
                                                       cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                     <  1:2375099/91‑1 (MQ=255)
                                                         tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                                   <  1:1421988/91‑1 (MQ=255)
                                                           aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                 <  1:2241759/91‑1 (MQ=255)
                                                           aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                 >  1:3534189/1‑91 (MQ=255)
                                                             cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                               >  1:3411228/1‑91 (MQ=255)
                                                               aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                             >  1:1042043/1‑91 (MQ=255)
                                                               aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                             >  1:2227880/1‑91 (MQ=255)
                                                               aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                             >  1:2227852/1‑91 (MQ=255)
                                                                tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                            >  1:1502707/1‑91 (MQ=255)
                                                                tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                            >  1:1502841/1‑91 (MQ=255)
                                                                 ttATGTAAATTCAAAATGCCAAGAAGTCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                           <  1:2995283/91‑1 (MQ=255)
                                                                  tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                          <  1:1860792/91‑1 (MQ=255)
                                                                  tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                          <  1:1860706/91‑1 (MQ=255)
                                                                  tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACCTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                          >  1:3497102/1‑91 (MQ=255)
                                                                   aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                         <  1:2810364/91‑1 (MQ=255)
                                                                   aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                         <  1:2090784/91‑1 (MQ=255)
                                                                   aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                         <  1:1515826/91‑1 (MQ=255)
                                                                            cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                <  1:276745/91‑1 (MQ=255)
                                                                              AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc              <  1:3071912‑M1/91‑1 (MQ=255)
                                                                              AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc              >  1:2089061‑M1/1‑91 (MQ=255)
                                                                              AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc              >  1:669819‑M1/1‑91 (MQ=255)
                                                                              AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc              >  1:1726786‑M1/1‑91 (MQ=255)
                                                                               aaTGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtg             <  1:2187874‑M1/91‑80 (MQ=255)
                                                                               aaTGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtg             <  1:2733523‑M1/91‑80 (MQ=255)
                                                                               AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa             >  1:2325233‑M1/1‑91 (MQ=255)
                                                                                ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCaa            <  1:1162244‑M1/91‑1 (MQ=255)
                                                                                 tGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaa           <  1:2316820‑M2/91‑62 (MQ=255)
                                                                                   ccAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaa         >  1:948340‑M1/1‑8 (MQ=255)
                                                                                   CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa         <  1:3986484‑M1/91‑1 (MQ=255)
                                                                                    cAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaat        <  1:3142604‑M1/91‑85 (MQ=255)
                                                                                    CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt        >  1:2172188‑M1/1‑91 (MQ=255)
                                                                                    CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt        <  1:262839‑M1/91‑1 (MQ=255)
                                                                                     aagaagcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatt       >  1:2171356‑M1/1‑6 (MQ=255)
                                                                                      agaagcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaccat      >  1:339524‑M1/1‑5 (MQ=255)
                                                                                       GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa     >  1:564559‑M1/1‑91 (MQ=255)
                                                                                        AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc    >  1:1892334‑M1/1‑91 (MQ=255)
                                                                                         AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt   <  1:240248‑M1/91‑1 (MQ=255)
                                                                                          GACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTTTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa  >  1:3495833‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
CTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA  >  USA300TCH1516_ALE/1836857‑1837037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.