BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1836947	64 (0.650)	6 (0.070)	6/132	NT	9.9%	intergenic (+31/+119)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	= 1836967	57 (0.700)	6 (0.070)	6/132	NT	9.9%	intergenic (+51/+99)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 112 total aligned reads displayed.

CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057

gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:2413102‑M1/58‑91 (MQ=255)

gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:2413063‑M1/58‑91 (MQ=255)

 tagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGc                                                                                           >  1:501444‑M1/57‑91 (MQ=255)

  agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                                                          >  1:3827026‑M1/56‑91 (MQ=255)

  agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                                                          >  1:71998‑M1/56‑91 (MQ=255)

     gaattattgaatcaaaggtttgatattgagttacaatgaaattaataatgaaAAATTACCAAGAAGACATTGGATTACTTCCATTGcttct                                                                                       >  1:1004033‑M1/53‑91 (MQ=255)

     atggtttcacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttct                                                                                       >  1:339524‑M2/5‑86 (MQ=255)

      aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                                                      >  1:2171356‑M2/1‑85 (MQ=255)

       aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                                     >  1:940107‑M2/1‑84 (MQ=255)

       aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                                     <  1:3142604‑M2/91‑8 (MQ=255)

        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  1:948340‑M2/1‑83 (MQ=255)

         gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                                                   >  1:2271062‑M1/49‑91 (MQ=255)

         gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                                                   >  1:2250881‑M1/49‑91 (MQ=255)

         gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                                                   >  1:2151144‑M1/49‑91 (MQ=255)

         gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                                                   >  1:2150600‑M1/49‑91 (MQ=255)

          ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                                                  >  1:3647986‑M2/1‑81 (MQ=255)

            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  1:2187874‑M2/91‑13 (MQ=255)

            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  1:2015863‑M2/91‑13 (MQ=255)

            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  1:2733523‑M2/91‑13 (MQ=255)

              caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                                                              <  1:1438520‑M2/91‑15 (MQ=255)

                 cTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc                                                                           >  1:26087/1‑91 (MQ=255)

                    aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                        >  1:689447/1‑91 (MQ=255)

                      ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                      >  1:943974/1‑91 (MQ=255)

                      ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                      <  1:1339208/91‑1 (MQ=255)

                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:223550/91‑1 (MQ=255)

                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:3261112/91‑1 (MQ=255)

                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:223539/91‑1 (MQ=255)

                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAATTTTTCattatt                                                                     <  1:3173739/91‑1 (MQ=255)

                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  1:2007053/91‑1 (MQ=255)

                          cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                                                  >  1:820834/1‑91 (MQ=255)

                          cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                                                  >  1:820204/1‑91 (MQ=255)

                           ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                 <  1:3015254/91‑1 (MQ=255)

                             tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                                                               <  1:3068654/91‑1 (MQ=255)

                              aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCGTTATTAATTTCa                                                              <  1:3201713/91‑1 (MQ=255)

                              aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                                              <  1:3014567/91‑1 (MQ=255)

                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                           >  1:1117725/1‑91 (MQ=255)

                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                           >  1:2491460/1‑91 (MQ=255)

                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                           <  1:2363036/91‑1 (MQ=255)

                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                           >  1:1291217/1‑91 (MQ=255)

                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                          >  1:666024/1‑91 (MQ=255)

                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                          >  1:364226/1‑91 (MQ=255)

                                   cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                                         <  1:2375099/91‑1 (MQ=255)

                                     tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                                                       <  1:1421988/91‑1 (MQ=255)

                                       aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                     <  1:2241759/91‑1 (MQ=255)

                                       aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                     >  1:3534189/1‑91 (MQ=255)

                                         cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                                                   >  1:3411228/1‑91 (MQ=255)

                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  1:1042043/1‑91 (MQ=255)

                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  1:2227880/1‑91 (MQ=255)

                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  1:2227852/1‑91 (MQ=255)

                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                >  1:1502707/1‑91 (MQ=255)

                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                >  1:1502841/1‑91 (MQ=255)

                                             ttATGTAAATTCAAAATGCCAAGAAGTCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                               <  1:2995283/91‑1 (MQ=255)

                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              <  1:1700337/91‑1 (MQ=255)

                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              <  1:1860706/91‑1 (MQ=255)

                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              <  1:1860792/91‑1 (MQ=255)

                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACCTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              >  1:3497102/1‑91 (MQ=255)

                                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                             <  1:1515826/91‑1 (MQ=255)

                                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                             <  1:2090784/91‑1 (MQ=255)

                                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                             <  1:2810364/91‑1 (MQ=255)

                                                  tAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAcc                                          >  1:575429/1‑91 (MQ=255)

                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  1:276745/91‑1 (MQ=255)

                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  1:2904207/91‑1 (MQ=255)

                                                          AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                  <  1:3071912‑M1/91‑1 (MQ=255)

                                                           AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                 >  1:2325233‑M1/1‑91 (MQ=255)

                                                            ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCaa                                >  1:2145579‑M1/1‑91 (MQ=255)

                                                            ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCaa                                <  1:1162244‑M1/91‑1 (MQ=255)

                                                             tGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaa                               <  1:2316820‑M2/91‑62 (MQ=255)

                                                               CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                             <  1:3986484‑M1/91‑1 (MQ=255)

                                                                CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                            >  1:2172170‑M1/1‑91 (MQ=255)

                                                                CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                            <  1:262839‑M1/91‑1 (MQ=255)

                                                                CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                            >  1:2172188‑M1/1‑91 (MQ=255)

                                                                  agaagaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaattt                          <  1:1453831‑M2/91‑67 (MQ=255)

                                                                   GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa                         >  1:564559‑M1/1‑91 (MQ=255)

                                                                    AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc                        >  1:1892334‑M1/1‑91 (MQ=255)

                                                                     AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                       <  1:240248‑M1/91‑1 (MQ=255)

                                                                      gaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgatt                      <  1:338960‑M2/91‑71 (MQ=255)

                                                                      GACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTTTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                      >  1:3495833‑M1/1‑91 (MQ=255)

                                                                       aCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattg                     <  1:1925965‑M2/91‑72 (MQ=255)

                                                                        cATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattgt                    <  1:2972479‑M2/91‑73 (MQ=255)

                                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                    >  1:2620570/1‑91 (MQ=255)

                                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                    >  1:2620569/1‑91 (MQ=255)

                                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                  <  1:954944/91‑1 (MQ=255)

                                                                           tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGt                 <  1:1190818/91‑1 (MQ=255)

                                                                              aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt              >  1:1006374/1‑91 (MQ=255)

                                                                              aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt              <  1:2037570/91‑1 (MQ=255)

                                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt           <  1:2967626/91‑1 (MQ=255)

                                                                                   ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt         <  1:399025/91‑1 (MQ=255)

                                                                                    tCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattgtattcaccaactt        <  1:2868583‑M2/91‑85 (MQ=255)

                                                                                     ccATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCa       >  1:1763348/1‑91 (MQ=255)

                                                                                     ccATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCGTTGGTTCAATCATTCACTACAAGTTATGCTGTCa       <  1:2266227/91‑1 (MQ=255)

                                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa      >  1:3234826/1‑91 (MQ=255)

                                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa      >  1:3158605/1‑91 (MQ=255)

                                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa      >  1:1275521/1‑91 (MQ=255)

                                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa     >  1:2729674/1‑91 (MQ=255)

                                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa     >  1:2729661/1‑91 (MQ=255)

                                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa     >  1:2089219/1‑91 (MQ=255)

                                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa     >  1:1687609/1‑91 (MQ=255)

                                                                                        ttGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaac    >  1:2579777/1‑91 (MQ=255)

                                                                                         tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca   <  1:56671/91‑1 (MQ=255)

                                                                                          gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa  >  1:627418/1‑91 (MQ=255)

CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.