BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1841984 =	61 (0.620)	8 (0.100)	6/134	NT	12.6%	intergenic (+24/+70)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1842029 =	60 (0.730)	8 (0.100)	6/134	NT	12.6%	intergenic (+69/+25)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 150 total aligned reads displayed.

ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGA  >  USA300TCH1516_ALE/1841894‑1842073

aCCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA                                                                                            <  1:1519184‑M1/91‑1 (MQ=255)

aCCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTCCTTTAGATAATTTACAGACAGAAAAGTACATTAA                                                                                            >  1:911908‑M1/1‑91 (MQ=255)

   atggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattagag                                                                                         >  1:2962301‑M1/88‑91 (MQ=255)

   aaaaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG                                                                                         <  1:4117853‑M1/91‑1 (MQ=255)

   aaaaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG                                                                                         <  1:90263‑M1/91‑1 (MQ=255)

   aaaaCGTCAAAGCCGATCAGAACATCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG                                                                                         <  1:1107389‑M1/91‑1 (MQ=255)

    tggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGc                                                                                        <  1:1863423‑M1/5‑1 (MQ=255)

    tggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGc                                                                                        >  1:373407‑M1/87‑91 (MQ=255)

     ggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGcc                                                                                       <  1:114457‑M1/6‑1 (MQ=255)

       cGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTA                                                                                     <  1:2266399‑M1/91‑1 (MQ=255)

         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   >  1:328564‑M1/1‑91 (MQ=255)

         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   <  1:875039‑M1/91‑1 (MQ=255)

         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   >  1:330239‑M1/1‑91 (MQ=255)

         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   <  1:874759‑M1/91‑1 (MQ=255)

         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   >  1:2353864‑M1/1‑91 (MQ=255)

          cAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC                                                                                  >  1:2010102‑M1/1‑91 (MQ=255)

          cAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC                                                                                  >  1:2010323‑M1/1‑91 (MQ=255)

          cAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC                                                                                  >  1:2228456‑M1/1‑91 (MQ=255)

           tttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCa                                                                                 >  1:2200611‑M1/80‑91 (MQ=255)

           aaaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA                                                                                 >  1:1032717‑M1/1‑91 (MQ=255)

            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT                                                                                <  1:170719‑M1/91‑1 (MQ=255)

             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                              <  1:1509612/91‑1 (MQ=255)

             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                              <  1:739522/91‑1 (MQ=255)

                 gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACAt                                                                          >  1:2748128/1‑91 (MQ=255)

                 gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACAt                                                                          >  1:1839716/1‑91 (MQ=255)

                   tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTc                                                                        <  1:630490/91‑1 (MQ=255)

                     aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCtt                                                                      >  1:428228/1‑91 (MQ=255)

                       aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAg                                                                    >  1:2496228/1‑91 (MQ=255)

                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaa                                                                    <  1:2303819‑M1/91‑13 (MQ=255)

                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAgg                                                                   <  1:3545187/91‑1 (MQ=255)

                          gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaa                                                                 <  1:1189439/91‑1 (MQ=255)

                              gtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaa                                                             >  1:1418068‑M1/61‑91 (MQ=255)

                              aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgt                                                              <  1:1546530‑M1/91‑19 (MQ=255)

                              aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcatgcctaagaatgt                                                              <  1:2385433‑M1/91‑19 (MQ=255)

                              aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATT‑AGAGCCTACTCATattcattcctaagaatgta                                                             <  1:829814‑M1/91‑20 (MQ=255)

                               taagaaaaaatgcttcatggctaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            >  1:3758050‑M1/60‑91 (MQ=255)

                               taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            >  1:3059851‑M1/60‑91 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  1:1466131‑M1/91‑20 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            >  1:1793633/1‑91 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            >  1:730468/1‑91 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            >  1:2570952/1‑91 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                            <  1:861736/91‑1 (MQ=255)

                                gccttggccA‑GGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                          <  1:2845606‑M2/87‑3 (MQ=255)

                                gccttggccA‑GGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                          <  1:2845583‑M2/87‑3 (MQ=255)

                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaa                                                            <  1:253513‑M1/91‑21 (MQ=255)

                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaa                                                            <  1:253700‑M1/91‑21 (MQ=255)

                                aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaatgaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAata                                                           >  1:3500892‑M1/59‑91 (MQ=255)

                                 agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                          >  1:705999‑M1/58‑91 (MQ=255)

                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                           <  1:1598754‑M1/91‑22 (MQ=255)

                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                           <  1:2037411‑M1/91‑22 (MQ=255)

                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATat                                                          >  1:221677‑M2/1‑89 (MQ=255)

                                  ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                          <  1:2140827‑M1/91‑23 (MQ=255)

                                  ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatg                                                         <  1:180207‑M2/91‑4 (MQ=255)

                                   aaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGa                                                        >  1:3155689‑M1/56‑91 (MQ=255)

                                    tGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgag                                                       <  1:1969057‑M2/91‑6 (MQ=255)

                                     ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagt                                                      >  1:1054368‑M2/1‑85 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagta                                                     <  1:2038044‑M2/91‑8 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagta                                                     <  1:2995958‑M2/91‑8 (MQ=255)

                                         aaGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTAtgagtaggc                                                    >  1:3876064‑M2/1‑82 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                >  1:3632016‑M2/1‑79 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                <  1:3084760‑M2/91‑13 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctc                                                >  1:3632174‑M2/1‑79 (MQ=255)

                                            gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATatgagtaggctct                                               <  1:3059564‑M2/91‑14 (MQ=255)

                                            gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATaagagtaggctct                                               <  1:144134‑M2/91‑14 (MQ=255)

                                              gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                             <  1:3664839/91‑1 (MQ=255)

                                              gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                             <  1:3663118/91‑1 (MQ=255)

                                                tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                           >  1:565548/1‑91 (MQ=255)

                                                tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                           >  1:1363022/1‑91 (MQ=255)

                                                 agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                          >  1:2145555/1‑91 (MQ=255)

                                                   agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                        <  1:509406/91‑1 (MQ=255)

                                                   agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                        <  1:1494488/91‑1 (MQ=255)

                                                    gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                       <  1:102881/91‑1 (MQ=255)

                                                    gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                       <  1:756899/91‑1 (MQ=255)

                                                    gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                       <  1:168764/91‑1 (MQ=255)

                                                          tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                 <  1:712799/91‑1 (MQ=255)

                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                               >  1:2907843/1‑91 (MQ=255)

                                                             aGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGc                              <  1:3014296/91‑1 (MQ=255)

                                                              gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                             >  1:1360666/1‑91 (MQ=255)

                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                          <  1:1577230/91‑1 (MQ=255)

                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                          <  1:1580858/91‑1 (MQ=255)

                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                          <  1:2057640/91‑1 (MQ=255)

                                                                     tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                      >  1:641665/1‑91 (MQ=255)

                                                                     tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                      >  1:975986/1‑91 (MQ=255)

                                                                      acagacagAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                     >  1:1608059/1‑91 (MQ=255)

                                                                        agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                   >  1:3259800/1‑91 (MQ=255)

                                                                        agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                   >  1:1390647/1‑91 (MQ=255)

                                                                        agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                   <  1:1928760/91‑1 (MQ=255)

                                                                         gacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                  <  1:3898800/91‑1 (MQ=255)

                                                                          acagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                 >  1:2504840/1‑91 (MQ=255)

                                                                           cagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTg                >  1:2641499/1‑91 (MQ=255)

                                                                              aaaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa             >  1:3243296/1‑91 (MQ=255)

                                                                                 aGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt          >  1:1512877/1‑91 (MQ=255)

                                                                                  gTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa         >  1:2816241/1‑91 (MQ=255)

                                                                                     cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc      >  1:707370/1‑91 (MQ=255)

                                                                                     cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc      >  1:2792712/1‑91 (MQ=255)

                                                                                     cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc      >  1:2721031/1‑91 (MQ=255)

                                                                                       ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt    >  1:972826/1‑91 (MQ=255)

                                                                                       ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAATCAt    >  1:3206613/1‑91 (MQ=255)

                                                                                          agagCCTACTCTTattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc  <  1:144134‑M1/91‑79 (MQ=255)

                                                                                          agagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc  <  1:3059804‑M1/91‑79 (MQ=255)

ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGA  >  USA300TCH1516_ALE/1841894‑1842073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.