BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1841984 =	61 (0.620)	8 (0.100)	6/134	NT	12.6%	intergenic (+24/+70)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1842029 =	60 (0.730)	8 (0.100)	6/134	NT	12.6%	intergenic (+69/+25)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 116 total aligned reads displayed.

GATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAT  >  USA300TCH1516_ALE/1841940‑1842119

gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                                                           <  1:3664839/91‑1 (MQ=255)

gATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTaa                                                                                           <  1:3663063/91‑1 (MQ=255)

   agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                                        >  1:2145555/1‑91 (MQ=255)

    gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                                       <  1:3873385/91‑1 (MQ=255)

     agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                                      >  1:932918/1‑91 (MQ=255)

     agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                                      <  1:509406/91‑1 (MQ=255)

     agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                                      <  1:1494488/91‑1 (MQ=255)

      gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                                     <  1:102881/91‑1 (MQ=255)

      gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                                     >  1:1597521/1‑91 (MQ=255)

      gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                                     <  1:168578/91‑1 (MQ=255)

      gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                                     <  1:168764/91‑1 (MQ=255)

          tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                                 >  1:2011997/1‑91 (MQ=255)

            tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                                                               <  1:712799/91‑1 (MQ=255)

              tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                                             >  1:2907843/1‑91 (MQ=255)

               aGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGc                                                                            <  1:3014296/91‑1 (MQ=255)

                gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                                                                           >  1:1360666/1‑91 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:2057640/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:2057478/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:989164/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:1577230/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:1576919/91‑1 (MQ=255)

                       tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                                    >  1:975986/1‑91 (MQ=255)

                       tACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                                    >  1:641665/1‑91 (MQ=255)

                        acagacagAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                                                                   >  1:1608059/1‑91 (MQ=255)

                          agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                                 >  1:3259800/1‑91 (MQ=255)

                          agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                                 >  1:3126516/1‑91 (MQ=255)

                          agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                                 >  1:1390647/1‑91 (MQ=255)

                          agacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                                 <  1:1928760/91‑1 (MQ=255)

                           gacagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                                                                <  1:3898800/91‑1 (MQ=255)

                            acagaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttatt                                                               >  1:2504840/1‑91 (MQ=255)

                                aaaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATa                                                           >  1:3243296/1‑91 (MQ=255)

                                 aaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                                                          <  1:2472157/91‑1 (MQ=255)

                                  aaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                                         >  1:3421665/1‑91 (MQ=255)

                                   aGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  1:1512877/1‑91 (MQ=255)

                                    gTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTa                                                       >  1:2816241/1‑91 (MQ=255)

                                     tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                                      >  1:3712715/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:2792712/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:708847/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:707370/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:2721031/1‑91 (MQ=255)

                                         ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                                  <  1:1039443/91‑1 (MQ=255)

                                         ttAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                                  >  1:972826/1‑91 (MQ=255)

                                         ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAATCAt                                                  >  1:3206613/1‑91 (MQ=255)

                                         ttAAGAGCCTACGCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAGCAt                                                  >  1:3206649/1‑91 (MQ=255)

                                             GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                              >  1:3563758‑M1/1‑91 (MQ=255)

                                             GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                              >  1:3911569‑M1/1‑91 (MQ=255)

                                             GAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                              >  1:3911413‑M1/1‑91 (MQ=255)

                                              AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             <  1:129146‑M1/91‑1 (MQ=255)

                                              AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             >  1:506969‑M1/1‑91 (MQ=255)

                                              AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             >  1:506845‑M1/1‑91 (MQ=255)

                                                CCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAt                                           <  1:3926725‑M1/91‑1 (MQ=255)

                                                 CTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                                          <  1:1687775‑M1/91‑1 (MQ=255)

                                                 CTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtt                                          <  1:3347931‑M1/91‑1 (MQ=255)

                                                   ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                                        <  1:1372573‑M1/91‑1 (MQ=255)

                                                   ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                                        <  1:1372845‑M1/91‑1 (MQ=255)

                                                   ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                                        <  1:3752114‑M1/91‑1 (MQ=255)

                                                   ACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                                        >  1:1100726‑M1/1‑91 (MQ=255)

                                                     TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                                      <  1:3391373‑M1/91‑1 (MQ=255)

                                                     TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                                      <  1:3684857‑M1/91‑1 (MQ=255)

                                                     TCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                                      <  1:1492907‑M1/91‑1 (MQ=255)

                                                      CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     <  1:1922050‑M1/91‑1 (MQ=255)

                                                      CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     >  1:1344068‑M1/1‑91 (MQ=255)

                                                      CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     <  1:1922115‑M1/91‑1 (MQ=255)

                                                      CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     <  1:1922726‑M1/91‑1 (MQ=255)

                                                      CAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     >  1:944542‑M1/1‑91 (MQ=255)

                                                       AT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                                    >  1:80417‑M1/1‑91 (MQ=255)

                                                        atattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                                    >  1:705999‑M2/35‑91 (MQ=255)

                                                        atattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                                    >  1:1919270‑M2/35‑91 (MQ=255)

                                                         tattcattcctaagaatgtaatgagtaggctctAATTCATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt                                   >  1:3500892‑M2/34‑91 (MQ=255)

                                                          tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttttaagt                                  >  1:1384046/1‑87 (MQ=255)

                                                          tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  1:3399042/1‑91 (MQ=255)

                                                          tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  <  1:2994934/91‑1 (MQ=255)

                                                          tACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  1:4091148/1‑91 (MQ=255)

                                                          attcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAGCCATGAAGCATTTTTTCTTa                                  >  1:3758050‑M2/33‑91 (MQ=255)

                                                          attcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  1:3059851‑M2/33‑91 (MQ=255)

                                                           ttcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAc                                 >  1:1418068‑M2/32‑91 (MQ=255)

                                                           aCATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAc                                 >  1:2580294/1‑91 (MQ=255)

                                                             aTTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACcg                               >  1:680202/1‑91 (MQ=255)

                                                              ttCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACcgc                              <  1:2201919/91‑1 (MQ=255)

                                                                cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga                            <  1:2200524/91‑1 (MQ=255)

                                                                cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga                            <  1:2200627/91‑1 (MQ=255)

                                                                 ttAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgac                           >  1:3717679/1‑91 (MQ=255)

                                                                   aGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga                         >  1:1413075/1‑91 (MQ=255)

                                                                      aatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaata                      >  1:1489399/1‑91 (MQ=255)

                                                                      aatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaata                      >  1:2827281/1‑91 (MQ=255)

                                                                       atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa                     >  1:519754/1‑91 (MQ=255)

                                                                       atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa                     <  1:2456176/91‑1 (MQ=255)

                                                                          aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg                  >  1:1583818/1‑91 (MQ=255)

                                                                          aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg                  <  1:3623686/91‑1 (MQ=255)

                                                                              tgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTaaa              >  1:2518189‑M2/13‑91 (MQ=255)

                                                                              tgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTaaa              >  1:2200611‑M2/13‑91 (MQ=255)

                                                                                   aggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGc         >  1:525098‑M2/8‑91 (MQ=255)

                                                                                    ggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGcc        >  1:2758963‑M2/7‑91 (MQ=255)

                                                                                    ggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGcc        <  1:114457‑M2/85‑1 (MQ=255)

                                                                                     gctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCa       <  1:1863423‑M2/86‑1 (MQ=255)

                                                                                     gctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCa       >  1:373407‑M2/6‑91 (MQ=255)

                                                                                      ctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCAt      >  1:2962301‑M2/5‑91 (MQ=255)

                                                                                      ctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCAt      >  1:2962559‑M2/5‑91 (MQ=255)

                                                                                          aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  <  1:2822942/91‑1 (MQ=255)

                                                                                          aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  >  1:3896688/1‑91 (MQ=255)

GATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAT  >  USA300TCH1516_ALE/1841940‑1842119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.