| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2088038 | 81 (0.820) | 16 (0.210) | 9/126 | NT | 17.7% | intergenic (+55/+40) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | = 2088052 | 85 (1.100) | intergenic (+69/+26) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 | |||||
Only 100 of 152 total aligned reads displayed.
ATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGT > USA300TCH1516_ALE/2087949‑2088127 | atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAg < 1:170329/91‑1 (MQ=255)atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAg > 1:2866550/1‑91 (MQ=255) tGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGa > 1:2598832/1‑91 (MQ=255) gTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACa < 1:1679718/91‑1 (MQ=255) tCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAt > 1:3042424/1‑91 (MQ=255) cTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAttt < 1:650133/91‑1 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:977009/91‑1 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:1520018/91‑1 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:2912835/91‑1 (MQ=255) aaaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatg < 1:808023‑M1/91‑13 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATTAATTAAAAGGTAGATATTTCTTCTTTATTTAAAGGTTTGGCAGACATTTCATAAc > 1:459516/1‑91 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc < 1:642181/91‑1 (MQ=255) aaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtc < 1:719403‑M1/91‑15 (MQ=255) aaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtc < 1:956177‑M1/91‑15 (MQ=255) cTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctg < 1:378137‑M1/91‑17 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgc < 1:4092316‑M1/91‑18 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgc < 1:1044919‑M1/91‑18 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgc < 1:1045246‑M1/91‑18 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc > 1:1065125‑M2/1‑88 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc > 1:3339203‑M2/1‑88 (MQ=255) aaTGAATATGCATACTAATAGTAGTTACATAAGTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgcc < 1:3529244‑M1/91‑19 (MQ=255) aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgcc < 1:961582‑M1/91‑19 (MQ=255) aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgcc < 1:2495385‑M1/91‑19 (MQ=255) aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcc < 1:522985‑M2/91‑5 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgcca < 1:2725513‑M1/91‑20 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgcca < 1:1834091‑M1/91‑20 (MQ=255) gAATATGTATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaa > 1:2075718‑M2/1‑84 (MQ=255) atatGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacc > 1:2669287‑M2/1‑82 (MQ=255) tGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttt < 1:317806‑M2/91‑13 (MQ=255) gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgccaaaccttta < 1:480383‑M1/91‑28 (MQ=255) gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttta > 1:4022871‑M2/1‑78 (MQ=255) tACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatat < 1:2624981‑M2/91‑17 (MQ=255) cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat < 1:2222543/91‑1 (MQ=255) tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa > 1:1009953/1‑91 (MQ=255) tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTCTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa > 1:2648098/1‑91 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt < 1:2375868/91‑1 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt > 1:3547944/1‑91 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt > 1:2794574/1‑91 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGGTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt > 1:2248817/1‑91 (MQ=255) agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt > 1:3923237/1‑91 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatct < 1:2393242‑M1/91‑46 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc < 1:3840575/91‑1 (MQ=255) aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGc < 1:3791448/91‑1 (MQ=255) aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAGTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc < 1:3504112/91‑1 (MQ=255) aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc > 1:1908668/1‑91 (MQ=255) aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc < 1:121595/91‑1 (MQ=255) aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt > 1:3355949/1‑91 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt < 1:308651/91‑1 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt < 1:308872/91‑1 (MQ=255) gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa > 1:1156421/1‑91 (MQ=255) aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatg < 1:2393242‑M2/91‑47 (MQ=255) gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa > 1:3917616/1‑91 (MQ=255) atatTTCTTTTTTATATAAAGGAGTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa > 1:1590802/1‑91 (MQ=255) atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa < 1:2340431/91‑1 (MQ=255) atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa < 1:876950/91‑1 (MQ=255) ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt < 1:285451/91‑1 (MQ=255) ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt < 1:286025/91‑1 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg > 1:1372005/1‑91 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTACATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg > 1:1370325/1‑91 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 1:3426294/91‑1 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 1:3426691/91‑1 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 1:3123749/91‑1 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 1:3084481/91‑1 (MQ=255) tttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAt < 1:3004434/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAGCTGCTTAtt < 1:3481850/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt > 1:3917356/1‑91 (MQ=255) atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt < 1:3619392/91‑1 (MQ=255) atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt < 1:2722241/91‑1 (MQ=255) taAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgc > 1:4022871‑M1/1‑13 (MQ=255) taAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgc < 1:480383‑M2/91‑65 (MQ=255) taAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt > 1:855228/1‑91 (MQ=255) aaaGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgca < 1:317806‑M1/91‑80 (MQ=255) aaaGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTa > 1:254446/1‑91 (MQ=255) aaGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAc < 1:1933058/91‑1 (MQ=255) aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc < 1:3926197/91‑1 (MQ=255) ggTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatat > 1:2669287‑M1/1‑9 (MQ=255) ggTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt > 1:2745686/1‑91 (MQ=255) tttGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattc > 1:474222‑M1/1‑7 (MQ=255) tttGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatacatattc > 1:2075718‑M1/1‑7 (MQ=255) tttGGCAGACATTTCATAACTTGCCAACCCTTTATATATCTAATTATCAAACTGCACTAAACTTGCCAAAACTGCTTATTCTATTACCTGc < 1:1263745/91‑1 (MQ=255) tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc < 1:3808714/91‑1 (MQ=255) ttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattca < 1:1228173‑M2/91‑72 (MQ=255) tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat < 1:670006‑M2/91‑73 (MQ=255) tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat < 1:1834091‑M2/91‑73 (MQ=255) tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt > 1:4086563/1‑91 (MQ=255) ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt < 1:2495385‑M2/91‑74 (MQ=255) ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaacttatgtaactactattagtatgcatattcatt < 1:3529244‑M2/91‑74 (MQ=255) ggCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCtt > 1:2117036/1‑91 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:4088848‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:61282‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:2789653‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:1065125‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:3339203‑M1/1‑3 (MQ=255) gCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta < 1:4092316‑M2/91‑75 (MQ=255) gCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta < 1:1045246‑M2/91‑75 (MQ=255) gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg > 1:2946284/1‑91 (MQ=255) gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg > 1:2946211/1‑91 (MQ=255) cAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag > 1:819002‑M1/1‑2 (MQ=255) cAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag < 1:378137‑M2/91‑76 (MQ=255) cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt < 1:3399527/91‑1 (MQ=255) | ATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGT > USA300TCH1516_ALE/2087949‑2088127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |