BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2088038	81 (0.820)	16 (0.210)	9/126	NT	17.7%	intergenic (+55/+40)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	= 2088052	85 (1.100)	16 (0.210)	9/126	NT	17.7%	intergenic (+69/+26)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 129 total aligned reads displayed.

CTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCG  >  USA300TCH1516_ALE/2087964‑2088142

cTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtg                                                                                          >  1:819002‑M2/1‑89 (MQ=255)

 tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc                                                                                         >  1:3339203‑M2/1‑88 (MQ=255)

 tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc                                                                                         >  1:2789653‑M2/1‑88 (MQ=255)

 tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc                                                                                         >  1:4088848‑M2/1‑88 (MQ=255)

 tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc                                                                                         >  1:61282‑M2/1‑88 (MQ=255)

     gAATATGTATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaa                                                                                     >  1:2075718‑M2/1‑84 (MQ=255)

     gAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaa                                                                                     >  1:474222‑M2/1‑84 (MQ=255)

       atatGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacc                                                                                   >  1:2669287‑M2/1‑82 (MQ=255)

          tGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttt                                                                                <  1:317806‑M2/91‑13 (MQ=255)

              tACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatat                                                                            <  1:2624981‑M2/91‑17 (MQ=255)

                cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat                                                                          <  1:2222543/91‑1 (MQ=255)

                 tAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATc                                                                         <  1:3513149/91‑1 (MQ=255)

                    tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa                                                                      >  1:1009953/1‑91 (MQ=255)

                    tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa                                                                      >  1:3456737/1‑91 (MQ=255)

                    tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa                                                                      >  1:1053001/1‑91 (MQ=255)

                      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                    <  1:2375868/91‑1 (MQ=255)

                      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                    >  1:2794574/1‑91 (MQ=255)

                      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                    >  1:3547928/1‑91 (MQ=255)

                      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGGTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                    >  1:2248817/1‑91 (MQ=255)

                       tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTa                                                                   >  1:2004903/1‑91 (MQ=255)

                        agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt                                                                  >  1:2859433/1‑91 (MQ=255)

                          ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa                                                                >  1:2488710/1‑91 (MQ=255)

                             cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc                                                             <  1:3403568/91‑1 (MQ=255)

                             cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc                                                             <  1:3840575/91‑1 (MQ=255)

                             cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATATAATTATCAAAc                                                             <  1:3182712/91‑1 (MQ=255)

                              aTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACt                                                            >  1:3023041/1‑91 (MQ=255)

                                  aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAGTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                        <  1:3504112/91‑1 (MQ=255)

                                       aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                   >  1:1908668/1‑91 (MQ=255)

                                       aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                   >  1:2880219/1‑91 (MQ=255)

                                        aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt                                                  >  1:3355949/1‑91 (MQ=255)

                                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                 <  1:308872/91‑1 (MQ=255)

                                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                 <  1:308651/91‑1 (MQ=255)

                                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                 <  1:308710/91‑1 (MQ=255)

                                          gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                                >  1:1156263/1‑91 (MQ=255)

                                          gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                                <  1:1387009/91‑1 (MQ=255)

                                          gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                                >  1:1156421/1‑91 (MQ=255)

                                            aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                              <  1:1859472/91‑1 (MQ=255)

                                            aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                              <  1:1735215/91‑1 (MQ=255)

                                             gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa                                             >  1:3917600/1‑91 (MQ=255)

                                             gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa                                             >  1:3921474/1‑91 (MQ=255)

                                             gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa                                             >  1:3917616/1‑91 (MQ=255)

                                              atatTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa                                            >  1:1591029/1‑91 (MQ=255)

                                              atatTTCTTTTTTATATAAAGGAGTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa                                            >  1:1590802/1‑91 (MQ=255)

                                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTATACTTACCaaaa                                          >  1:3754135/1‑91 (MQ=255)

                                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                          <  1:876950/91‑1 (MQ=255)

                                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                          <  1:2340431/91‑1 (MQ=255)

                                                  ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                        <  1:286025/91‑1 (MQ=255)

                                                   tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                       >  1:1372005/1‑91 (MQ=255)

                                                   tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTACATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                       >  1:1370325/1‑91 (MQ=255)

                                                       ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa                                   <  1:3426294/91‑1 (MQ=255)

                                                       ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa                                   <  1:3123749/91‑1 (MQ=255)

                                                        tttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAt                                  <  1:3004434/91‑1 (MQ=255)

                                                         ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAGCTGCTTAtt                                 <  1:3481850/91‑1 (MQ=255)

                                                         ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                 <  1:224126/91‑1 (MQ=255)

                                                         ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                 >  1:3917356/1‑91 (MQ=255)

                                                           atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                               <  1:2722241/91‑1 (MQ=255)

                                                           atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                               <  1:3619392/91‑1 (MQ=255)

                                                              taAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgc                            <  1:480383‑M2/91‑65 (MQ=255)

                                                              taAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt                            <  1:2105860/91‑1 (MQ=255)

                                                               aaaGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTa                           >  1:254446/1‑91 (MQ=255)

                                                               aaaGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTa                           <  1:2685802/91‑1 (MQ=255)

                                                                 aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc                         <  1:3926629/91‑1 (MQ=255)

                                                                 aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc                         <  1:3926197/91‑1 (MQ=255)

                                                                 aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc                         <  1:2383837/91‑1 (MQ=255)

                                                                    tttGGCAGACATTTCATAACTTGCCAACCCTTTATATATCTAATTATCAAACTGCACTAAACTTGCCAAAACTGCTTATTCTATTACCTGc                      <  1:1263745/91‑1 (MQ=255)

                                                                    tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                      <  1:798465/91‑1 (MQ=255)

                                                                    tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                      <  1:4038281/91‑1 (MQ=255)

                                                                    tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                      <  1:3808714/91‑1 (MQ=255)

                                                                    tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                      <  1:3808770/91‑1 (MQ=255)

                                                                     ttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattca                     <  1:1228173‑M2/91‑72 (MQ=255)

                                                                      tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat                    <  1:2725513‑M2/91‑73 (MQ=255)

                                                                      tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat                    <  1:670006‑M2/91‑73 (MQ=255)

                                                                      tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat                    <  1:1834091‑M2/91‑73 (MQ=255)

                                                                      tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                    >  1:4086563/1‑91 (MQ=255)

                                                                       ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt                   <  1:961582‑M2/91‑74 (MQ=255)

                                                                       ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt                   <  1:2495385‑M2/91‑74 (MQ=255)

                                                                       ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaacttatgtaactactattagtatgcatattcatt                   <  1:3529244‑M2/91‑74 (MQ=255)

                                                                       ggCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCtt                   >  1:2117036/1‑91 (MQ=255)

                                                                       ggCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCtt                   >  1:2523522/1‑91 (MQ=255)

                                                                        gCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta                  <  1:1044919‑M2/91‑75 (MQ=255)

                                                                        gCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta                  <  1:1045246‑M2/91‑75 (MQ=255)

                                                                        gCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta                  <  1:4092316‑M2/91‑75 (MQ=255)

                                                                        gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg                  >  1:2946211/1‑91 (MQ=255)

                                                                        gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg                  >  1:2946284/1‑91 (MQ=255)

                                                                         cAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag                 <  1:378137‑M2/91‑76 (MQ=255)

                                                                         cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                 <  1:3399527/91‑1 (MQ=255)

                                                                           gACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagtt               <  1:956177‑M2/91‑78 (MQ=255)

                                                                             cATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagtttt             <  1:808023‑M2/91‑80 (MQ=255)

                                                                             cATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTAc             <  1:1241051/91‑1 (MQ=255)

                                                                             cATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTAc             <  1:687704/91‑1 (MQ=255)

                                                                                 tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct         >  1:656017/1‑91 (MQ=255)

                                                                                 tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct         >  1:1206525/1‑91 (MQ=255)

                                                                                   aTAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTcc       <  1:4015124/91‑1 (MQ=255)

                                                                                    tAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCt      >  1:1749531/1‑91 (MQ=255)

                                                                                     aaCTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTg     >  1:508871/1‑91 (MQ=255)

                                                                                      aCTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGt    <  1:2820396/91‑1 (MQ=255)

                                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc   <  1:2345283/91‑1 (MQ=255)

                                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc   <  1:2447521/91‑1 (MQ=255)

                                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc   <  1:3697294/91‑1 (MQ=255)

                                                                                        ttGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCg  >  1:122318/1‑91 (MQ=255)

CTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCG  >  USA300TCH1516_ALE/2087964‑2088142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.