BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2793464 =	115 (1.170)	5 (0.060)	4/140	NT	5.1%	coding (2179/2982 nt)	yueB	ESX secretion system protein YueB
*	?	USA300TCH1516_ALE	2793513 =	86 (1.000)	5 (0.060)	4/140	NT	5.1%	coding (2130/2982 nt)	yueB	ESX secretion system protein YueB

Only 100 of 152 total aligned reads displayed.

ATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGT  >  USA300TCH1516_ALE/2793374‑2793554

gaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactacata                                                                                            <  1:3337412‑M1/1‑1 (MQ=255)

gaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaata                                                                                            <  1:1047306‑M1/1‑1 (MQ=255)

gaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaata                                                                                            >  1:3584269‑M1/91‑91 (MQ=255)

gaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaata                                                                                            <  1:589770‑M1/1‑1 (MQ=255)

aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTgaga                                                                                            >  1:292133/1‑91 (MQ=255)

aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTgaga                                                                                            >  1:3403807/1‑91 (MQ=255)

aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTgaga                                                                                            >  1:2189450/1‑91 (MQ=255)

 tttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaa                                                                                           >  1:3009502/1‑91 (MQ=255)

 aacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaataa                                                                                           <  1:3128946‑M1/2‑1 (MQ=255)

  acagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaataaa                                                                                          <  1:2918845‑M1/3‑1 (MQ=255)

    gTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaaaaa                                                                                        >  1:31236/1‑91 (MQ=255)

    gTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaaaaa                                                                                        >  1:1034271/1‑91 (MQ=255)

    agcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaataaaaa                                                                                        >  1:1976636‑M1/87‑91 (MQ=255)

     tCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAAt                                                                                       <  1:3701091/91‑1 (MQ=255)

     gcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAAt                                                                                       <  1:3706721‑M1/6‑1 (MQ=255)

     gcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAAt                                                                                       >  1:3882554‑M1/86‑91 (MQ=255)

      cgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATc                                                                                      >  1:514020‑M1/85‑91 (MQ=255)

      cgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATc                                                                                      >  1:514004‑M1/85‑91 (MQ=255)

      cGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATc                                                                                      >  1:747091/1‑91 (MQ=255)

       gattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCa                                                                                     >  1:362015‑M1/84‑91 (MQ=255)

       gattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCa                                                                                     >  1:2256120‑M1/84‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:1501561/1‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:1722500/1‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:2791914/1‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:1501122/1‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:2380991/1‑91 (MQ=255)

         cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                   >  1:696915/1‑91 (MQ=255)

             atcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTaaa                                                                               >  1:1845803/1‑91 (MQ=255)

              tcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAAt                                                                              >  1:2477200/1‑91 (MQ=255)

               catcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATc                                                                             <  1:1632855/91‑1 (MQ=255)

                   tttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGAt                                                                         <  1:4112352/91‑1 (MQ=255)

                    ttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATa                                                                        >  1:4092363/1‑91 (MQ=255)

                    ttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATa                                                                        <  1:1370963/91‑1 (MQ=255)

                    ttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATa                                                                        >  1:1496812/1‑91 (MQ=255)

                     tGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATaa                                                                       <  1:1206482/91‑1 (MQ=255)

                         tAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGcc                                                                   >  1:2525088/1‑91 (MQ=255)

                         tAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGcc                                                                   >  1:2524939/1‑91 (MQ=255)

                         tAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGcc                                                                   >  1:4125719/1‑91 (MQ=255)

                           aTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtt                                                                 <  1:1744110/91‑1 (MQ=255)

                             ttCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtttt                                                               <  1:1418388/91‑1 (MQ=255)

                             ttCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtttt                                                               <  1:2591345/91‑1 (MQ=255)

                              tCTTGAAAATTTTATTCGCTTTTTTTAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttttt                                                              <  1:3865754/91‑1 (MQ=255)

                              tCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttttt                                                              <  1:1479069/91‑1 (MQ=255)

                                ttGAAAATTTTATTCGCTTTTTTCAAATCTTTATCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCg                                                            <  1:3527416/91‑1 (MQ=255)

                                  gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCt                                                          >  1:3782918/1‑91 (MQ=255)

                                  gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCt                                                          >  1:2878255/1‑91 (MQ=255)

                                  gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCt                                                          >  1:2878999/1‑91 (MQ=255)

                                       ttttATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTgg                                                     <  1:167727/91‑1 (MQ=255)

                                       ttttATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTgg                                                     <  1:2871536/91‑1 (MQ=255)

                                         ttATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCt                                                   <  1:1658152/91‑1 (MQ=255)

                                          ttaccaacgttattaaatggttatgatcaagcggtaggattactaattAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTg                                                  >  1:2582291‑M1/49‑91 (MQ=255)

                                          ttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTg                                                  >  1:2581837‑M1/49‑91 (MQ=255)

                                          tATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTg                                                  <  1:2347371/91‑1 (MQ=255)

                                           aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGa                                                 >  1:2466278/1‑91 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                >  1:1344195/1‑91 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                >  1:1344111/1‑91 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                >  1:1247302/1‑91 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                <  1:1188713/91‑1 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                <  1:210971/91‑1 (MQ=255)

                                             tCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtt                                               <  1:3942919/91‑1 (MQ=255)

                                              cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAttt                                              >  1:1786233/1‑91 (MQ=255)

                                              cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAttt                                              >  1:2357929/1‑91 (MQ=255)

                                                cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAttttt                                            >  1:3228784/1‑91 (MQ=255)

                                                 ttttttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTttta                                           >  1:727855/1‑91 (MQ=255)

                                                    tttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattt                                        <  1:2285317/91‑1 (MQ=255)

                                                     ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattta                                       >  1:1090047/1‑91 (MQ=255)

                                                      tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg                                      <  1:338239/91‑1 (MQ=255)

                                                      tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg                                      >  1:194944/1‑91 (MQ=255)

                                                       cAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGt                                     >  1:1312499/1‑91 (MQ=255)

                                                        aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTa                                    >  1:2322050/1‑91 (MQ=255)

                                                         aaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTaa                                   >  1:564097/1‑91 (MQ=255)

                                                          aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt                                  <  1:2670021/91‑1 (MQ=255)

                                                           tCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATc                                 >  1:2228194/1‑91 (MQ=255)

                                                               tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc                             >  1:3652361/1‑91 (MQ=255)

                                                                  cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGc                          >  1:3347748/1‑91 (MQ=255)

                                                                  cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGc                          >  1:3347782/1‑91 (MQ=255)

                                                                   aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCt                         <  1:1995125/91‑1 (MQ=255)

                                                                    aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCtt                        >  1:3346861/1‑91 (MQ=255)

                                                                    aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCtt                        <  1:2666366/91‑1 (MQ=255)

                                                                     cATCAGGCAATTTATTTTGAGAAAAATCAGCGAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTg                       <  1:1092545/91‑1 (MQ=255)

                                                                       tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                     <  1:331453/91‑1 (MQ=255)

                                                                       tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                     <  1:331902/91‑1 (MQ=255)

                                                                        cAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                    <  1:4116058/91‑1 (MQ=255)

                                                                          ggCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCAt                  >  1:3482235/1‑91 (MQ=255)

                                                                           gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATa                 <  1:3902621/91‑1 (MQ=255)

                                                                            cAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATaa                >  1:2440408/1‑91 (MQ=255)

                                                                             aaTTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc               <  1:810087/91‑1 (MQ=255)

                                                                              atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAcc              <  1:2728043/91‑1 (MQ=255)

                                                                               tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa             <  1:3882622/91‑1 (MQ=255)

                                                                               tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa             >  1:2365735/1‑91 (MQ=255)

                                                                               tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa             >  1:2365714/1‑91 (MQ=255)

                                                                               tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa             >  1:1937762/1‑91 (MQ=255)

                                                                               tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa             >  1:160401/1‑91 (MQ=255)

                                                                                 tatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAtt           >  1:2988704/1‑91 (MQ=255)

                                                                                 tatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAtt           <  1:289618/91‑1 (MQ=255)

                                                                                  atttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt          <  1:3298586/91‑1 (MQ=255)

                                                                                   ttttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta         >  1:386328/1‑91 (MQ=255)

                                                                                    tttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa        >  1:3747581/1‑91 (MQ=255)

                                                                                        agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAAc    >  1:902099/1‑91 (MQ=255)

                                                                                          AAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGt  <  1:1955829‑M1/91‑1 (MQ=255)

ATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGT  >  USA300TCH1516_ALE/2793374‑2793554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.