BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2793464 =	115 (1.170)	5 (0.060)	4/140	NT	5.1%	coding (2179/2982 nt)	yueB	ESX secretion system protein YueB
*	?	USA300TCH1516_ALE	2793513 =	86 (1.000)	5 (0.060)	4/140	NT	5.1%	coding (2130/2982 nt)	yueB	ESX secretion system protein YueB

Only 100 of 131 total aligned reads displayed.

TTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT  >  USA300TCH1516_ALE/2793423‑2793603

ttttttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTttta                                                                                            >  1:727855/1‑91 (MQ=255)

    ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattta                                                                                        >  1:1090047/1‑91 (MQ=255)

     tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg                                                                                       <  1:338239/91‑1 (MQ=255)

     tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg                                                                                       >  1:194944/1‑91 (MQ=255)

      cAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGt                                                                                      >  1:2588083/1‑91 (MQ=255)

      cAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGt                                                                                      >  1:1312499/1‑91 (MQ=255)

       aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTa                                                                                     >  1:2322050/1‑91 (MQ=255)

       aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTATTTCGCTTGTGGCTGATTTTTATTTAGTa                                                                                     >  1:3321986/1‑91 (MQ=255)

         aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt                                                                                   <  1:2670021/91‑1 (MQ=255)

          tCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATc                                                                                  <  1:2371886/91‑1 (MQ=255)

          tCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATc                                                                                  >  1:2228194/1‑91 (MQ=255)

           cTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATcc                                                                                 >  1:2878551/1‑91 (MQ=255)

              tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc                                                                              >  1:3652361/1‑91 (MQ=255)

              tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc                                                                              <  1:1085886/91‑1 (MQ=255)

               ttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAcc                                                                             <  1:1920304/91‑1 (MQ=255)

                 cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGc                                                                           >  1:3347748/1‑91 (MQ=255)

                 cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTCATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGc                                                                           >  1:3588976/1‑91 (MQ=255)

                  aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCt                                                                          <  1:1995125/91‑1 (MQ=255)

                   aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCtt                                                                         <  1:2666366/91‑1 (MQ=255)

                   aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCtt                                                                         >  1:3346861/1‑91 (MQ=255)

                   aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCtt                                                                         >  1:2339157/1‑91 (MQ=255)

                   aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCACtt                                                                         >  1:3347024/1‑91 (MQ=255)

                      tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                                                                      <  1:331453/91‑1 (MQ=255)

                         ggCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCAt                                                                   >  1:2491686/1‑91 (MQ=255)

                         ggCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCAt                                                                   >  1:3482235/1‑91 (MQ=255)

                            aaTTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                <  1:810087/91‑1 (MQ=255)

                             atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAcc                                                               <  1:2728043/91‑1 (MQ=255)

                              tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                              >  1:1937762/1‑91 (MQ=255)

                              tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                              <  1:3882622/91‑1 (MQ=255)

                              tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                              >  1:160401/1‑91 (MQ=255)

                              tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                              >  1:2365644/1‑91 (MQ=255)

                              tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                              >  1:2365735/1‑91 (MQ=255)

                                tatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAtt                                                            <  1:289618/91‑1 (MQ=255)

                                tatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAtt                                                            >  1:2988704/1‑91 (MQ=255)

                                 atttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                           <  1:3298586/91‑1 (MQ=255)

                                  ttttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta                                                          >  1:3420803/1‑91 (MQ=255)

                                  ttttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta                                                          >  1:386328/1‑91 (MQ=255)

                                   tttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa                                                         >  1:3747581/1‑91 (MQ=255)

                                   tttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa                                                         >  1:3988768/1‑91 (MQ=255)

                                       agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAAc                                                     >  1:902099/1‑91 (MQ=255)

                                         AAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGt                                                   <  1:1955829‑M1/91‑1 (MQ=255)

                                            AATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                >  1:3007353‑M1/1‑91 (MQ=255)

                                            AATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                >  1:2703173‑M1/1‑91 (MQ=255)

                                             atcagccacaagcgaaaaaggctttatcagatttagctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                               >  1:3897980‑M2/46‑91 (MQ=255)

                                             ATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                               <  1:1417274‑M1/91‑1 (MQ=255)

                                             ATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                               >  1:4040258‑M1/1‑91 (MQ=255)

                                               cagccacaagcgaaaaaggctttatcagatttagctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                             >  1:2581837‑M2/44‑91 (MQ=255)

                                               CAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                             >  1:3927593‑M1/1‑91 (MQ=255)

                                                 GCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                           >  1:1686346‑M1/1‑91 (MQ=255)

                                                  CTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAtt                                          <  1:560807‑M1/91‑1 (MQ=255)

                                                    aaaTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAtttt                                        <  1:2609939/91‑1 (MQ=255)

                                                    aaaTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAtttt                                        <  1:1903330/91‑1 (MQ=255)

                                                     aaTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTAAATAACGTTGGTAAAttttt                                       >  1:2040109/1‑91 (MQ=255)

                                                      aTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa                                      <  1:1082051/91‑1 (MQ=255)

                                                          gATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACGATTTAATAACGTTGGTAAATTTTTATTca                                  >  1:3324858/1‑91 (MQ=255)

                                                           aTAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                 >  1:1969012/1‑91 (MQ=255)

                                                            tAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTCATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcaca                                <  1:1132944/91‑1 (MQ=255)

                                                            tAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcaca                                <  1:1133002/91‑1 (MQ=255)

                                                             aaaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCacac                               <  1:3748418/91‑1 (MQ=255)

                                                             aaaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCacac                               >  1:2012030/1‑91 (MQ=255)

                                                              aaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACt                              <  1:494106/91‑1 (MQ=255)

                                                              aaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACt                              >  1:1775577/1‑91 (MQ=255)

                                                                gCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                            >  1:3688236/1‑91 (MQ=255)

                                                                 ccTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                           <  1:553540/91‑1 (MQ=255)

                                                                 ccTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                           <  1:1296408/91‑1 (MQ=255)

                                                                 ccTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                           >  1:2216/1‑91 (MQ=255)

                                                                 ccTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                           >  1:2415521/1‑91 (MQ=255)

                                                                  cTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt                          <  1:4048266/91‑1 (MQ=255)

                                                                   tttttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                         <  1:2800435/91‑1 (MQ=255)

                                                                    ttttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGt                        <  1:298570/91‑1 (MQ=255)

                                                                    ttttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAGCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGt                        <  1:3289656/91‑1 (MQ=255)

                                                                        cGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCa                    >  1:42161/1‑91 (MQ=255)

                                                                         gCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAt                   <  1:1112484/91‑1 (MQ=255)

                                                                         gCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAt                   <  1:1467407/91‑1 (MQ=255)

                                                                         gCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAt                   <  1:1617101/91‑1 (MQ=255)

                                                                          cTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAtt                  >  1:3145977/1‑91 (MQ=255)

                                                                          cTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAtt                  >  1:315630/1‑91 (MQ=255)

                                                                          cTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAtt                  <  1:1492014/91‑1 (MQ=255)

                                                                          cTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAtt                  >  1:314583/1‑91 (MQ=255)

                                                                          cTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAtt                  <  1:576802/91‑1 (MQ=255)

                                                                               ggCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTa             <  1:271764/91‑1 (MQ=255)

                                                                                gctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTaa            <  1:2205494‑M2/81‑1 (MQ=255)

                                                                                  tgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATc          >  1:362015‑M2/9‑91 (MQ=255)

                                                                                  tgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATc          >  1:2256120‑M2/9‑91 (MQ=255)

                                                                                   gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         >  1:514237‑M2/8‑91 (MQ=255)

                                                                                   gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         >  1:514004‑M2/8‑91 (MQ=255)

                                                                                   gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         >  1:3375726‑M2/8‑91 (MQ=255)

                                                                                   gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         >  1:2912972‑M2/8‑91 (MQ=255)

                                                                                   gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         >  1:64696‑M2/8‑91 (MQ=255)

                                                                                    atttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGc        >  1:3882554‑M2/7‑91 (MQ=255)

                                                                                    atttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGc        <  1:3706721‑M2/85‑1 (MQ=255)

                                                                                     tttttATTTAGTAATCCTATCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCt       >  1:2562491‑M2/6‑91 (MQ=255)

                                                                                       tttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt     <  1:2918845‑M2/88‑1 (MQ=255)

                                                                                        ttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt    <  1:3128946‑M2/89‑1 (MQ=255)

                                                                                         tATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   >  1:1326807‑M2/2‑91 (MQ=255)

                                                                                         tATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   <  1:589770‑M2/90‑1 (MQ=255)

                                                                                         tATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   >  1:3584269‑M2/2‑91 (MQ=255)

                                                                                         tATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   <  1:1047306‑M2/90‑1 (MQ=255)

                                                                                         tATGTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   <  1:3337412‑M2/90‑1 (MQ=255)

                                                                                          atttaGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCt  <  1:2785733/91‑1 (MQ=255)

TTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT  >  USA300TCH1516_ALE/2793423‑2793603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.