| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 198 | 386 (1.100) | 24 (0.070) | 7/146 | NT | 6.1% | intergenic (–/‑34) | –/repA | –/replication protein A |
| ? | CP000731 | = 216 | 393 (1.230) | intergenic (–/‑16) | –/repA | –/replication protein A | |||||
Only 100 of 633 total aligned reads displayed.
TACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATC > CP000731/108‑288 | tggtaaagaatactttagggatttgataaaatctttctttgtaattttcttgcactgtaaaatattgattttgcatgacaaaaaACCTCtt < 1:3547723‑M1/7‑1 (MQ=255)tACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTT > 1:3363402‑M1/1‑91 (MQ=255) tGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCa < 1:2925736/91‑1 (MQ=255) tattatATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa < 1:891297/91‑1 (MQ=255) attatATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAAc > 1:3649092/1‑91 (MQ=255) attatATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAAc > 1:1261028/1‑91 (MQ=255) tatataATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTa < 1:1828346/91‑1 (MQ=255) atataATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTaa > 1:916090/1‑91 (MQ=255) aTGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAatat > 1:2523305/1‑91 (MQ=255) ataataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAa < 1:2626579‑M2/91‑2 (MQ=255) taataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAaa < 1:575080‑M2/91‑3 (MQ=255) tttgataaaatctttctttgtaattttcttgcactgtaaaatattgattttgcatgacaaaaaACCTCTTACCAAACTAAAATATGGAAag > 1:3240053‑M1/64‑91 (MQ=255) aataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAaag > 1:2658711‑M2/1‑88 (MQ=255) atatCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAaaga > 1:2267195‑M2/1‑87 (MQ=255) tatCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTtccatattttagtttggtaagag < 1:4092794‑M1/91‑24 (MQ=255) atCTTAGTGCAAGCACCTAAATCATTAAATAACTGTAAAGCTAAATAAAAACGTTTTATTACCTCTTtccatattttagtttggtaagagg < 1:3526561‑M1/91‑25 (MQ=255) atCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTtccatattttagtttggtaagagg < 1:708266‑M1/91‑25 (MQ=255) atCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAaagagg < 1:1700800‑M2/91‑7 (MQ=255) tCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTtccatattttagtttggtaagaggt < 1:1336924‑M1/91‑26 (MQ=255) tCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAGAATATGGAaagaggt > 1:1283233‑M2/1‑84 (MQ=255) tCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAaagaggt < 1:3628383‑M2/91‑8 (MQ=255) ttAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGttt < 1:512067/91‑1 (MQ=255) ttAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGttt > 1:545692/1‑91 (MQ=255) tAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtttt < 1:695437/91‑1 (MQ=255) aatctttctttgtaattttcttgcactgtaaaatattgattttgcatgacaaaaaACCTCTTACCAAACTAAAATATGGAAAGAGGttttt > 1:2241620‑M1/56‑91 (MQ=255) aGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGgtttt > 1:2799395/1‑91 (MQ=255) cAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTc < 1:3933374/91‑1 (MQ=255) aaGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCa > 1:1921228/1‑91 (MQ=255) gCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATg > 1:592247/1‑91 (MQ=255) cACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGc > 1:2965495/1‑91 (MQ=255) ccTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaa > 1:2015915/1‑91 (MQ=255) cTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaa < 1:1158936/91‑1 (MQ=255) cTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaa > 1:3561381/1‑91 (MQ=255) tAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaaa < 1:418569/91‑1 (MQ=255) aaTCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATc > 1:1313063/1‑91 (MQ=255) tCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCaa < 1:641338/91‑1 (MQ=255) taaataaaTGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtt > 1:1779647/1‑91 (MQ=255) taaataaaTGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtt > 1:3301982/1‑91 (MQ=255) aataaatGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtttt < 1:1614651/91‑1 (MQ=255) aataaatGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtttt > 1:1725149/1‑91 (MQ=255) ataaatGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTa > 1:3083347/1‑91 (MQ=255) aatGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAg < 1:1744801/91‑1 (MQ=255) atGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGt > 1:3773248/1‑91 (MQ=255) atGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGt > 1:784672/1‑91 (MQ=255) tGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTg > 1:3906940/1‑91 (MQ=255) tGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTg > 1:4050465/1‑91 (MQ=255) tGTAAAGCTAAATAAAAACGTATTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTg > 1:1524812/1‑91 (MQ=255) tAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAGCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCa > 1:3481448/1‑91 (MQ=255) tAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCa < 1:3164378/91‑1 (MQ=255) aaaGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCaa < 1:3971155/91‑1 (MQ=255) aaaGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCaa > 1:327681/1‑91 (MQ=255) aaGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAg < 1:1805481/91‑1 (MQ=255) aaGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAg < 1:1544865/91‑1 (MQ=255) aGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGa < 1:2572570/91‑1 (MQ=255) aGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGa > 1:2125803/1‑91 (MQ=255) gCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa < 1:3183488/91‑1 (MQ=255) gCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa > 1:3056907/1‑91 (MQ=255) gCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa < 1:117771/91‑1 (MQ=255) gCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa > 1:2431491/1‑91 (MQ=255) aaataaaAGCGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAATATCAATATTTTACAGTGCAAGAAAAt < 1:4132046/91‑1 (MQ=255) ataaaAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTa > 1:1875544/1‑91 (MQ=255) ataaaAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTa > 1:813205/1‑91 (MQ=255) ataaaAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTa > 1:237425/1‑91 (MQ=255) taaaAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTAc > 1:1948731/1‑91 (MQ=255) aaaaaCGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACa > 1:3087845/1‑91 (MQ=255) aaaCGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaa < 1:402367/91‑1 (MQ=255) aCGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaaga > 1:1467708/1‑91 (MQ=255) aCGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaaga < 1:3427749/91‑1 (MQ=255) gTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaagaaa > 1:1245842/1‑91 (MQ=255) ttattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAt > 1:736962/1‑91 (MQ=255) tattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtt < 1:2164285/91‑1 (MQ=255) tattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtt > 1:3876703/1‑91 (MQ=255) attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt < 1:944692/91‑1 (MQ=255) attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt > 1:1013714/1‑91 (MQ=255) attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt > 1:2097855/1‑91 (MQ=255) attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt < 1:1360483/91‑1 (MQ=255) attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt > 1:2478839/1‑91 (MQ=255) ttaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtttt > 1:1988977/1‑91 (MQ=255) ttaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtttt > 1:2412039/1‑91 (MQ=255) aCCTCTTtccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaaga > 1:1195131‑M1/1‑7 (MQ=255) aCCTCTTACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaaga < 1:1634065‑M2/91‑67 (MQ=255) ccTCTTACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagat < 1:1962836‑M2/91‑68 (MQ=255) ccTCTTACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagat < 1:2845990‑M2/91‑68 (MQ=255) CCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATc > 1:3710674‑M1/1‑91 (MQ=255) CTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCa > 1:141709‑M1/1‑91 (MQ=255) CTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCa > 1:1116373‑M1/1‑91 (MQ=255) CTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCa > 1:2212394‑M1/1‑91 (MQ=255) CTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCa < 1:3616828‑M1/91‑1 (MQ=255) CTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCa < 1:2062965‑M1/91‑1 (MQ=255) tctTtccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatat < 1:616054‑M1/91‑88 (MQ=255) TCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCaa > 1:1659730‑M1/1‑91 (MQ=255) TCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCaa < 1:3821960‑M1/91‑1 (MQ=255) TCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCaa > 1:2763585‑M1/1‑91 (MQ=255) ctTtccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatatt > 1:2340083‑M1/1‑3 (MQ=255) ctTtccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatatt > 1:2713554‑M1/1‑3 (MQ=255) tttccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatatta < 1:2312214‑M1/91‑90 (MQ=255) tttccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatatta > 1:1008696‑M1/1‑2 (MQ=255) ttccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatattat > 1:2894365‑M1/1‑1 (MQ=255) ttccatattttagtttggtaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatattat < 1:3212957‑M1/91‑91 (MQ=255) tACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatattat < 1:955168‑M2/91‑73 (MQ=255) | TACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATC > CP000731/108‑288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |