BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 198	386 (1.100)	24 (0.070)	7/146	NT	6.1%	intergenic (–/‑34)	–/repA	–/replication protein A
*	?	CP000731	= 216	393 (1.230)	24 (0.070)	7/146	NT	6.1%	intergenic (–/‑16)	–/repA	–/replication protein A

Only 100 of 589 total aligned reads displayed.

AATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTCTTTACC  >  CP000731/126‑306

aataatATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGa                                                                                            >  1:3459443/1‑91 (MQ=255)

  taataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaa                                                                                          >  1:1008696‑M2/1‑89 (MQ=255)

  taataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaa                                                                                          <  1:3490582‑M2/91‑3 (MQ=255)

  taataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaa                                                                                          >  1:598537‑M2/1‑89 (MQ=255)

  gatttgataaaatctttctttgtaattttcttgcactgtaaaatattgattttgcatgacaaaaaACCTCTTACCAAACTAAAATATGGaa                                                                                           >  1:1882915‑M1/66‑91 (MQ=255)

   aataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaag                                                                                         >  1:3636664‑M2/1‑88 (MQ=255)

   aataTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaag                                                                                         >  1:2340083‑M2/1‑88 (MQ=255)

    atatCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaaga                                                                                        <  1:616054‑M2/91‑5 (MQ=255)

     tatCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAtagag                                                                                       >  1:3279246‑M2/1‑86 (MQ=255)

     tatCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaagag                                                                                       >  1:1936217‑M2/1‑86 (MQ=255)

      atCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAaagagg                                                                                      <  1:1700800‑M2/91‑7 (MQ=255)

        cTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtt                                                                                    <  1:3085708/91‑1 (MQ=255)

        cTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtt                                                                                    <  1:3021157/91‑1 (MQ=255)

        cTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtt                                                                                    <  1:2233587/91‑1 (MQ=255)

          tAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtttt                                                                                  <  1:2476214/91‑1 (MQ=255)

          tAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtttt                                                                                  <  1:1654866/91‑1 (MQ=255)

              gCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGt                                                                              <  1:3074718/91‑1 (MQ=255)

               cAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTc                                                                             >  1:1792683/1‑91 (MQ=255)

                aaGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCa                                                                            >  1:2807824/1‑91 (MQ=255)

                   cACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGc                                                                         >  1:2965340/1‑91 (MQ=255)

                     ccTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaa                                                                       >  1:2015915/1‑91 (MQ=255)

                      cTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaa                                                                      >  1:3561381/1‑91 (MQ=255)

                      cTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaa                                                                      <  1:1160396/91‑1 (MQ=255)

                       tAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCaaaa                                                                     <  1:249928/91‑1 (MQ=255)

                         aaTCATTCAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATc                                                                   <  1:2074791/91‑1 (MQ=255)

                         aaTCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATc                                                                   <  1:2698065/91‑1 (MQ=255)

                         aaTCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATc                                                                   <  1:394138/91‑1 (MQ=255)

                          aTCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCa                                                                  >  1:1499607/1‑91 (MQ=255)

                          aTCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCa                                                                  <  1:2193117/91‑1 (MQ=255)

                           tCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCaa                                                                 <  1:641408/91‑1 (MQ=255)

                              ttAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAatat                                                              <  1:1300321/91‑1 (MQ=255)

                               taaataaaTGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtt                                                             <  1:1349200/91‑1 (MQ=255)

                                 aataaatGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATAtttt                                                           <  1:1614651/91‑1 (MQ=255)

                                    aaatGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACa                                                        <  1:1428254/91‑1 (MQ=255)

                                     aatGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAg                                                       <  1:1315605/91‑1 (MQ=255)

                                      atGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGt                                                      <  1:714841/91‑1 (MQ=255)

                                      atGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGt                                                      >  1:784672/1‑91 (MQ=255)

                                       tGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCGAACTAAAATATGGAAAGAGGTTTTTTGCCATGCAAAATCAATATTTTACAGTg                                                     >  1:3850428/1‑91 (MQ=255)

                                       tGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTg                                                     >  1:124441/1‑91 (MQ=255)

                                       tGTAAAGCTAAATAAAAACG‑TATTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTg                                                     >  1:1524812/1‑91 (MQ=255)

                                        gTAAAGCTAAATAAAAACG‑CTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGc                                                    >  1:195497/1‑91 (MQ=255)

                                             gCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa                                               >  1:2431492/1‑91 (MQ=255)

                                             gCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa                                               <  1:117771/91‑1 (MQ=255)

                                             gCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaa                                               >  1:3884399/1‑91 (MQ=255)

                                               taaataaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaaaa                                             >  1:2568468/1‑91 (MQ=255)

                                               taaataaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaaaa                                             >  1:4084288/1‑91 (MQ=255)

                                               taaataaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGaaaa                                             >  1:1255283/1‑91 (MQ=255)

                                                aaataaaAGCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAATATCAATATTTTACAGTGCAAGAAAAt                                            <  1:4132046/91‑1 (MQ=255)

                                                 aataaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAAtt                                           <  1:3222577/91‑1 (MQ=255)

                                                  ataaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTa                                          >  1:237425/1‑91 (MQ=255)

                                                   taaaAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTAc                                         <  1:2264812/91‑1 (MQ=255)

                                                    aaaaaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACa                                        <  1:1833828/91‑1 (MQ=255)

                                                    aaaaaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACa                                        >  1:316038/1‑91 (MQ=255)

                                                    aaaaaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACa                                        <  1:696903/91‑1 (MQ=255)

                                                      aaaCGTTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaa                                       >  1:3419479/1‑91 (MQ=255)

                                                       aaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaag                                     <  1:1413439/91‑1 (MQ=255)

                                                       aaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaag                                     >  1:549254/1‑91 (MQ=255)

                                                       aaCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaag                                     >  1:2060224/1‑91 (MQ=255)

                                                        aCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaaga                                    <  1:504162/91‑1 (MQ=255)

                                                        aCG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaaga                                    <  1:2865291/91‑1 (MQ=255)

                                                          g‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAGATTACaaagaaa                                  <  1:3196127/91‑1 (MQ=255)

                                                          g‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaagaaa                                  >  1:5886/1‑91 (MQ=255)

                                                          g‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaagaaa                                  >  1:3912116/1‑91 (MQ=255)

                                                          g‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaagaaa                                  >  1:3624007/1‑91 (MQ=255)

                                                            ttttATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACaaagaaag                                 >  1:1727288/1‑91 (MQ=255)

                                                              ttattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAt                               <  1:417521/91‑1 (MQ=255)

                                                              ttattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAt                               >  1:3811471/1‑91 (MQ=255)

                                                               tattaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtt                              <  1:2910459/91‑1 (MQ=255)

                                                                attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACTAAGAAAGAttt                             >  1:3759968/1‑91 (MQ=255)

                                                                attaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAttt                             >  1:2098435/1‑91 (MQ=255)

                                                                 ttaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtttt                            >  1:1988977/1‑91 (MQ=255)

                                                                 ttaCCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGAtttt                            >  1:2412039/1‑91 (MQ=255)

                                                                   ACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTAt                          <  1:805787‑M1/91‑1 (MQ=255)

                                                                    ccTCTTACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagat                         <  1:2617801‑M2/91‑68 (MQ=255)

                                                                    CCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATc                         <  1:885840‑M1/91‑1 (MQ=255)

                                                                    CCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATc                         >  1:3710674‑M1/1‑91 (MQ=255)

                                                                    CCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATc                         >  1:4019688‑M1/1‑91 (MQ=255)

                                                                      TCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCaa                       >  1:930911‑M1/1‑91 (MQ=255)

                                                                      TCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCaa                       >  1:2763585‑M1/1‑91 (MQ=255)

                                                                         tACCAAACTAAAATATGGAaagaggtaataaaacgtttttatttagctttacatttatttaatgatttaggtgcttgcactaagatattat                    <  1:955168‑M2/91‑73 (MQ=255)

                                                                          aCCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATcc                   >  1:1755049/1‑91 (MQ=255)

                                                                           ccAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATccc                  <  1:4043897/91‑1 (MQ=255)

                                                                            cAATCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCt                 <  1:3210889/91‑1 (MQ=255)

                                                                             aaaCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTa                >  1:1667377/1‑91 (MQ=255)

                                                                               aCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTaaa              >  1:3537319/1‑91 (MQ=255)

                                                                               aCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTaaa              >  1:1084713/1‑91 (MQ=255)

                                                                               aCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTaaa              <  1:3113062/91‑1 (MQ=255)

                                                                               aCTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTaaa              >  1:526592/1‑91 (MQ=255)

                                                                                 tAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTTCAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGt            <  1:3305631/91‑1 (MQ=255)

                                                                                 tAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGt            <  1:3248331/91‑1 (MQ=255)

                                                                                   aaaTATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTAt          >  1:230644/1‑91 (MQ=255)

                                                                                   aaaTATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTAt          >  1:2139851/1‑91 (MQ=255)

                                                                                   aaaTATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTAt          >  1:2122157/1‑91 (MQ=255)

                                                                                   aaaTATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTAt          >  1:3960093/1‑91 (MQ=255)

                                                                                     atatGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTc        <  1:3182901/91‑1 (MQ=255)

                                                                                     atatGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTc        <  1:155640/91‑1 (MQ=255)

                                                                                     atatGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTc        >  1:1208996/1‑91 (MQ=255)

                                                                                      tatGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTCt       >  1:2930168/1‑91 (MQ=255)

                                                                                       atGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTCtt      <  1:2653066/91‑1 (MQ=255)

                                                                                       atGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTCtt      >  1:1119975/1‑91 (MQ=255)

AATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACG‑TTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTTGTCATGCAAAATCAATATTTTACAGTGCAAGAAAATTACAAAGAAAGATTTTATCAAATCCCTAAAGTATTCTTTACC  >  CP000731/126‑306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.