| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | 1 = | 0 (0.000) | 279 (0.030) | 15/160 | NT | 19.7% | intergenic (–/‑279) | –/USA300HOU_RS14890 | –/replication protein |
| ? | NC_012417 | 3063 = | 2269 (0.230) | intergenic (‑389/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
Only 100 of 10276 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGA > NC_012417/1‑91 | tttgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatat > 1:2669504‑M1/90‑91 (MQ=255) ttgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATg < 1:509970‑M1/3‑1 (MQ=255) tgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGc > 1:2555088‑M1/88‑91 (MQ=255) tgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGc < 1:1298548‑M1/4‑1 (MQ=255) tgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGc < 1:2390708‑M1/4‑1 (MQ=255) tgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCaa < 1:2197862‑M1/6‑1 (MQ=255) cgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAata > 1:555176‑M1/84‑91 (MQ=255) gtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAatat < 1:2633645‑M1/9‑1 (MQ=255) gtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAatat < 1:3216797‑M1/9‑1 (MQ=255) tgaaaggaaaatttgacaataaaaaaccctagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAAtata > 1:3881692‑M1/82‑91 (MQ=255) gaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATataa < 1:878959‑M1/11‑1 (MQ=255) gaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATataa < 1:3422842‑M1/11‑1 (MQ=255) aaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATataat > 1:300046‑M1/80‑91 (MQ=255) ggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtact < 1:1230834‑M1/15‑1 (MQ=255) ggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtact < 1:3462940‑M1/15‑1 (MQ=255) aaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtactac > 1:2923221‑M1/75‑91 (MQ=255) aaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATactact < 1:2708794‑M1/18‑1 (MQ=255) aaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATactact < 1:697955‑M1/18‑1 (MQ=255) aatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATActacta < 1:2049989‑M1/19‑1 (MQ=255) atttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAg > 1:1647641‑M1/72‑91 (MQ=255) atttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAg > 1:1452810‑M1/72‑91 (MQ=255) atttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAg < 1:3652005‑M1/20‑1 (MQ=255) tttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATAATACTAGa < 1:2081593‑M1/21‑1 (MQ=255) ttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGaa < 1:1566459‑M1/22‑1 (MQ=255) gacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGt > 1:2814231‑M1/68‑91 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:960036‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:739412‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta > 1:3808444‑M1/67‑91 (MQ=255) caataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGtat > 1:1265727‑M1/66‑91 (MQ=255) caataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGtat > 1:13794‑M1/66‑91 (MQ=255) aataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGtata < 1:1941333‑M1/27‑1 (MQ=255) aaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAAcc > 1:2521010‑M1/62‑91 (MQ=255) aaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCg > 1:3500740‑M1/61‑91 (MQ=255) aaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCg < 1:478735‑M1/31‑1 (MQ=255) aaaaaccccagttatattattaaggtgtcgaagcttaaataatactgggggtctttttatATGCAATATAATACTTCTAGAAGTATAACCg > 1:3541366‑M1/61‑91 (MQ=255) aaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGa > 1:2473298‑M1/60‑91 (MQ=255) aaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaa < 1:3105535‑M1/33‑1 (MQ=255) aaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaaa < 1:3360966‑M1/34‑1 (MQ=255) accccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaaaa > 1:21244‑M1/57‑91 (MQ=255) cccccagtattatttaagattcgacaccttaataatataactggggtttttttatATGCAATATAATACTACTAGAAGTATAACCGAAAAt < 1:4034193‑M1/36‑1 (MQ=255) ccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCgaaaaa < 1:663154‑M1/36‑2 (MQ=255) ccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAAt > 1:1902550‑M1/56‑91 (MQ=255) agttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 1:622488‑M1/52‑91 (MQ=255) agttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 1:771499‑M1/52‑91 (MQ=255) agttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 1:809864‑M1/52‑91 (MQ=255) gttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGa < 1:3766045‑M1/41‑1 (MQ=255) gttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGa < 1:3610914‑M1/41‑1 (MQ=255) tattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataat > 1:1118137‑M1/47‑91 (MQ=255) attattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataata < 1:1613890‑M1/46‑1 (MQ=255) attattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataata < 1:2012521‑M1/46‑1 (MQ=255) ttattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGAtaataa > 1:1076473‑M1/45‑91 (MQ=255) tattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaa > 1:1000114‑M1/44‑91 (MQ=255) tattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaa < 1:1415251‑M1/48‑1 (MQ=255) tattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaa > 1:2282528‑M1/44‑91 (MQ=255) tattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaa > 1:2430013‑M1/44‑91 (MQ=255) taaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACg > 1:2958319‑M1/41‑91 (MQ=255) aaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGt > 1:1157648‑M1/40‑91 (MQ=255) aggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGtt > 1:3070388‑M1/39‑91 (MQ=255) gtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaa > 1:3034826‑M1/37‑91 (MQ=255) gtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaa < 1:4067721‑M1/55‑1 (MQ=255) gtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaa > 1:1787069‑M1/37‑91 (MQ=255) tgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaaa > 1:3952307‑M1/36‑91 (MQ=255) gtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaaaa < 1:3843726‑M1/57‑1 (MQ=255) tcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAg < 1:3394950‑M1/58‑1 (MQ=255) cgaatcttaaataatactgggggactttttatATGCAATATAATACAACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGa < 1:3287899‑M1/59‑1 (MQ=255) gaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGat > 1:3146461‑M1/32‑91 (MQ=255) cttaaataatactgggggtctttttatATGCAATATAATACTACTAGCAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGa < 1:4142078‑M1/64‑1 (MQ=255) cttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGa < 1:440643‑M1/64‑1 (MQ=255) cttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGa > 1:3248537‑M1/28‑91 (MQ=255) cttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGa < 1:1976571‑M1/64‑1 (MQ=255) ttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGAc > 1:1489673‑M1/27‑91 (MQ=255) taaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACg > 1:103648‑M1/26‑91 (MQ=255) aaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGa > 1:2848645‑M1/25‑91 (MQ=255) aaataatactgggggtctttttatATGCAATATAATACGACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGa > 1:119423‑M1/25‑91 (MQ=255) ataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaa < 1:2239722‑M1/69‑1 (MQ=255) ataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaa < 1:2774286‑M1/69‑1 (MQ=255) ataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaa < 1:1718727‑M1/69‑1 (MQ=255) taatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaaa < 1:1865884‑M1/70‑1 (MQ=255) tactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTg > 1:182834‑M1/19‑91 (MQ=255) actgggggtctttttatATGCAATATAATACTATTAGAAGTATAACCGAAAATCAAGATGATAAAACGTTAAAAGATATGACGAAAAGTgg > 1:3690259‑M1/18‑91 (MQ=255) ctgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTggg < 1:3915727‑M1/75‑1 (MQ=255) tgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGa > 1:1753690‑M1/16‑91 (MQ=255) tgggggtcttttgatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGa < 1:3178734‑M1/76‑1 (MQ=255) gggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGaa > 1:2886659‑M1/15‑91 (MQ=255) ggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGaaa < 1:1339231‑M1/78‑1 (MQ=255) gggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaac > 1:2164278‑M1/13‑91 (MQ=255) gggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaac < 1:919159‑M1/79‑1 (MQ=255) ggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaaca < 1:1684377‑M1/80‑1 (MQ=255) ggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaaca > 1:2322592‑M1/12‑91 (MQ=255) ggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaaca < 1:594418‑M1/80‑1 (MQ=255) ggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaaca < 1:4106779‑M1/80‑1 (MQ=255) ggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaaca < 1:3574952‑M1/80‑1 (MQ=255) tctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaacaac < 1:2601701‑M1/82‑1 (MQ=255) tctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaacaac < 1:1528239‑M1/82‑1 (MQ=255) ctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACg > 1:844202‑M1/9‑91 (MQ=255) ttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCa < 1:2353197‑M1/87‑1 (MQ=255) ttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCa < 1:3988739‑M1/87‑1 (MQ=255) ttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCa < 1:3326268‑M1/87‑1 (MQ=255) tatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCAt > 1:3728557‑M1/4‑91 (MQ=255) tATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATgg < 1:274439‑M1/90‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGA > NC_012417/1‑91 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |