BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	2143 =	5513 (0.550)	395 (0.040)	30/148	NT	7.1%	coding (532/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	2161 =	5288 (0.570)	395 (0.040)	30/148	NT	7.1%	coding (514/582 nt)	USA300HOU_RS14900	hypothetical protein

Only 100 of 10998 total aligned reads displayed.

CGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAA  >  NC_012417/2053‑2234

cGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCAtagt                                                                                             <  1:2331367/91‑1 (MQ=255)

cGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCAtagt                                                                                             <  1:3699895/91‑1 (MQ=255)

  aGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCAtagtag                                                                                           <  1:2064579/91‑1 (MQ=255)

   ggCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGc                                                                                          >  1:2588386/1‑91 (MQ=255)

    gCTCAACGTCAATAAAGCAATTGGAATAAATGGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCt                                                                                         <  1:3442528/91‑1 (MQ=255)

    gCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCt                                                                                         >  1:1574975/1‑91 (MQ=255)

    gCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCt                                                                                         >  1:1504008/1‑91 (MQ=255)

    aatcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCt                                                                                         >  1:252131‑M1/87‑91 (MQ=255)

     cTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTg                                                                                        >  1:1244991/1‑91 (MQ=255)

     cTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTg                                                                                        <  1:2369467/91‑1 (MQ=255)

     atcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTg                                                                                        <  1:3025420‑M1/6‑1 (MQ=255)

     atcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTg                                                                                        >  1:2880271‑M1/86‑91 (MQ=255)

     atcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTg                                                                                        >  1:4044072‑M1/86‑91 (MQ=255)

         cagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGAt                                                                                    >  1:3217412‑M1/82‑91 (MQ=255)

         aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTggaat                                                                                    <  1:963242/91‑5 (MQ=255)

         aCGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAt                                                                                    <  1:1758470/91‑1 (MQ=255)

          gtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaagGAAACCATAGTAGCTGCGAtt                                                                                   >  1:2913522‑M1/71‑91 (MQ=255)

          cGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAtt                                                                                   >  1:777119/1‑91 (MQ=255)

          cGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAtt                                                                                   >  1:2101606/1‑91 (MQ=255)

          cGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAtt                                                                                   >  1:3399261/1‑91 (MQ=255)

           gcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGATTc                                                                                  >  1:1542500‑M1/80‑91 (MQ=255)

           gcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGATTc                                                                                  >  1:1205589‑M1/80‑91 (MQ=255)

            TCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGTTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTcc                                                                                 <  1:3587282‑M2/91‑1 (MQ=255)

            TCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTcc                                                                                 <  1:1139200‑M2/91‑1 (MQ=255)

            TCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTcc                                                                                 <  1:740510‑M2/91‑1 (MQ=255)

              gtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGATTCCAg                                                                               >  1:2733879‑M1/77‑91 (MQ=255)

               ATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGc                                                                              >  1:3969798‑M2/1‑91 (MQ=255)

                TAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCt                                                                             >  1:2032645‑M2/1‑91 (MQ=255)

                TAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCt                                                                             >  1:2620801‑M2/1‑91 (MQ=255)

                 AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                            <  1:511459‑M2/91‑1 (MQ=255)

                 AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                            >  1:381286‑M2/1‑91 (MQ=255)

                 AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                            <  1:2953387‑M2/91‑1 (MQ=255)

                 AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                            <  1:3662669‑M2/91‑1 (MQ=255)

                   aGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAgg                                                                          <  1:3744333‑M2/91‑3 (MQ=255)

                     tgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccatagTAGCTGCGATTCCAGCTAGGtt                                                                        >  1:1614077‑M1/70‑91 (MQ=255)

                     cAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAggtt                                                                        <  1:1470141‑M2/91‑5 (MQ=255)

                      gttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccatagTAGCTGCGATTCCAGCTAGGttt                                                                       >  1:1910094‑M1/69‑91 (MQ=255)

                       aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAggtttc                                                                      >  1:933366‑M2/1‑85 (MQ=255)

                        ttGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTcc                                                                     >  1:1066579/1‑91 (MQ=255)

                           gAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCttt                                                                  >  1:2987200/1‑91 (MQ=255)

                            aataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCtttt                                                                 >  1:2409162/1‑91 (MQ=255)

                             ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTa                                                                <  1:1723912/91‑1 (MQ=255)

                              taaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTAt                                                               >  1:3477932/1‑91 (MQ=255)

                               aaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATc                                                              >  1:2215263/1‑91 (MQ=255)

                                 ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                            >  1:4091196/1‑91 (MQ=255)

                                         tAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAg                                                    <  1:2293587/91‑1 (MQ=255)

                                          aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                   <  1:81848/91‑1 (MQ=255)

                                           aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                  <  1:3893133/91‑1 (MQ=255)

                                            aGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                 <  1:2181094/91‑1 (MQ=255)

                                             gTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTaa                                                <  1:117585/91‑1 (MQ=255)

                                                aCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttt                                             >  1:1990910/1‑91 (MQ=255)

                                                aCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttt                                             >  1:41314/1‑91 (MQ=255)

                                                 cccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCATTTTTAGCTAAtttt                                            >  1:2810271/1‑91 (MQ=255)

                                                 cccGTATTTAAGATTACATTGTACATCCTGCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttt                                            <  1:3326628/91‑1 (MQ=255)

                                                  ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                           >  1:547287/1‑91 (MQ=255)

                                                   cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                          >  1:351136/1‑91 (MQ=255)

                                                   cGTATTTAAGATGACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                          >  1:3178386/1‑91 (MQ=255)

                                                    gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                                         >  1:3551285/1‑91 (MQ=255)

                                                         tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                    <  1:284647/91‑1 (MQ=255)

                                                         tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                    <  1:1328088/91‑1 (MQ=255)

                                                           aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                  >  1:377894/1‑91 (MQ=255)

                                                           aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                  >  1:1286750/1‑91 (MQ=255)

                                                           aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                  >  1:2447571/1‑91 (MQ=255)

                                                           aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                  >  1:2699096/1‑91 (MQ=255)

                                                            gATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGcc                                 >  1:3622540/1‑91 (MQ=255)

                                                               tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                              <  1:431005/91‑1 (MQ=255)

                                                                aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                             >  1:1875174/1‑91 (MQ=255)

                                                                aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                             <  1:8561/91‑1 (MQ=255)

                                                                 cATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTa                            <  1:895745/91‑1 (MQ=255)

                                                                    tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT                         <  1:3365057‑M1/91‑1 (MQ=255)

                                                                    tGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGT                         <  1:469198‑M1/91‑1 (MQ=255)

                                                                     gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                        <  1:1402044‑M1/91‑1 (MQ=255)

                                                                     gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                        <  1:38524‑M1/91‑1 (MQ=255)

                                                                      tACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT                       >  1:1098477‑M1/1‑91 (MQ=255)

                                                                      tACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT                       >  1:3250559‑M1/1‑91 (MQ=255)

                                                                       aCATCCTTCGAAACCATAGTAGCTGCGATTTCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                      <  1:658932‑M1/91‑1 (MQ=255)

                                                                       aCATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                      <  1:3098919‑M1/91‑1 (MQ=255)

                                                                           ccTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGc                  <  1:1949616/91‑1 (MQ=255)

                                                                           ccTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGc                  <  1:2553103/91‑1 (MQ=255)

                                                                           ccTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGc                  <  1:579348/91‑1 (MQ=255)

                                                                            ctccGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCt                 >  1:2663148/4‑91 (MQ=255)

                                                                            cTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCt                 >  1:2771637/1‑91 (MQ=255)

                                                                               cGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa              >  1:1000669/1‑91 (MQ=255)

                                                                               cGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa              >  1:2255309/1‑91 (MQ=255)

                                                                                 AAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAAc            <  1:3931222‑M1/91‑1 (MQ=255)

                                                                                 AAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAAc            >  1:3064752‑M1/1‑91 (MQ=255)

                                                                                  AACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa           <  1:3283984‑M1/91‑1 (MQ=255)

                                                                                   aCCATAGTAGCTGCGATTCCAGCTAggtttcgaaggatgtacaatgtaatcttaaatacgggttactttagatactatttattccaattgc          <  1:1801004‑M2/91‑67 (MQ=255)

                                                                                   ACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACAt          <  1:165484‑M1/91‑1 (MQ=255)

                                                                                   ACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACAt          <  1:701498‑M1/91‑1 (MQ=255)

                                                                                    CCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCGTTAACATc         <  1:1438348‑M1/91‑1 (MQ=255)

                                                                                     CATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt        >  1:4007247‑M1/1‑91 (MQ=255)

                                                                                      aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt       >  1:1838194/1‑91 (MQ=255)

                                                                                       tagtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTc      <  1:621726‑M2/91‑2 (MQ=255)

                                                                                        agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca     >  1:2483482‑M2/1‑89 (MQ=255)

                                                                                         gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa    <  1:1688663‑M2/91‑4 (MQ=255)

                                                                                         gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa    <  1:1364291‑M2/91‑4 (MQ=255)

                                                                                         gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa    <  1:2144752‑M2/91‑4 (MQ=255)

                                                                                         gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa    <  1:1032424‑M2/91‑4 (MQ=255)

                                                                                          TAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCaaa   <  1:3141203‑M1/91‑1 (MQ=255)

CGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAA  >  NC_012417/2053‑2234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.