BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	2143 =	5513 (0.550)	395 (0.040)	30/148	NT	7.1%	coding (532/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	2161 =	5288 (0.570)	395 (0.040)	30/148	NT	7.1%	coding (514/582 nt)	USA300HOU_RS14900	hypothetical protein

Only 100 of 9672 total aligned reads displayed.

TTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGT  >  NC_012417/2077‑2250

 tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCt                                                                                    >  1:695762/1‑91 (MQ=255)

 tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCt                                                                                    >  1:1177582/1‑91 (MQ=255)

    gccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccatagTAGCTGCGATTC‑CAGCTAGGTTTCCtttt                                                                                 >  1:2720401‑M1/63‑91 (MQ=255)

    aataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCtttt                                                                                 >  1:103186/1‑91 (MQ=255)

     ataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTa                                                                                >  1:164642/1‑91 (MQ=255)

       aaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATc                                                                              >  1:3821607/1‑91 (MQ=255)

        aataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATcc                                                                             >  1:3621390/1‑91 (MQ=255)

        aataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATcc                                                                             >  1:3390839/1‑91 (MQ=255)

        aataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATcc                                                                             <  1:81610/91‑1 (MQ=255)

         ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATccc                                                                            <  1:577408/91‑1 (MQ=255)

          taGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCa                                                                           >  1:3979258/1‑91 (MQ=255)

            gTATCTAAAGTACCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCGAAt                                                                         >  1:3207928/1‑91 (MQ=255)

            gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAAt                                                                         >  1:3582646/1‑91 (MQ=255)

            gTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAAt                                                                         >  1:2758106/1‑91 (MQ=255)

              aTCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAAttt                                                                       <  1:1979722/91‑1 (MQ=255)

                 tAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAg                                                                    <  1:209126/91‑1 (MQ=255)

                  aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                                   <  1:202073/91‑1 (MQ=255)

                  aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                                   <  1:2974696/91‑1 (MQ=255)

                  aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                                   <  1:251251/91‑1 (MQ=255)

                   aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                                  <  1:3317496/91‑1 (MQ=255)

                   aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                                  <  1:1288865/91‑1 (MQ=255)

                    aGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                                 >  1:2205957/1‑91 (MQ=255)

                    aGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                                 <  1:1095781/91‑1 (MQ=255)

                     gTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTaa                                                                >  1:228871/1‑91 (MQ=255)

                        aCCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttt                                                             >  1:2940806/1‑91 (MQ=255)

                         cccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttt                                                            >  1:1207712/1‑91 (MQ=255)

                         cccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttt                                                            >  1:737920/1‑91 (MQ=255)

                          ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                                           >  1:1873100/1‑91 (MQ=255)

                          ccGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttt                                                           >  1:547287/1‑91 (MQ=255)

                           cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                                          <  1:1063521/91‑1 (MQ=255)

                           cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                                          <  1:4097454/91‑1 (MQ=255)

                            gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                                                         >  1:3167798/1‑91 (MQ=255)

                               tttAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCt                                                      <  1:3279408/91‑1 (MQ=255)

                                ttAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTa                                                     <  1:1400418/91‑1 (MQ=255)

                                 tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                                    <  1:3131/91‑1 (MQ=255)

                                 tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                                    >  1:1714482/1‑91 (MQ=255)

                                 tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                                    >  1:2796532/1‑91 (MQ=255)

                                   aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                                  >  1:2407974/1‑91 (MQ=255)

                                   aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                                  >  1:1141077/1‑91 (MQ=255)

                                      ttACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCt                                               <  1:4014847/91‑1 (MQ=255)

                                       tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                              <  1:1496710/91‑1 (MQ=255)

                                        aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                                             <  1:3086153/91‑1 (MQ=255)

                                        aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                                             >  1:960912/1‑91 (MQ=255)

                                        aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                                             >  1:1941157/1‑91 (MQ=255)

                                          aTTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAA                                           >  1:3782669‑M1/1‑91 (MQ=255)

                                          aTTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAA                                           <  1:3752309‑M1/91‑1 (MQ=255)

                                           ttGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAG                                          >  1:2870572‑M1/1‑91 (MQ=255)

                                           ttGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAG                                          <  1:2172392‑M1/91‑1 (MQ=255)

                                             gTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                                        >  1:654445‑M1/1‑91 (MQ=255)

                                             gTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                                        >  1:2367915‑M1/1‑91 (MQ=255)

                                             gTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                                        <  1:232834‑M1/91‑1 (MQ=255)

                                              tACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT                                       <  1:3701890‑M1/91‑1 (MQ=255)

                                              tACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT                                       <  1:247843‑M1/91‑1 (MQ=255)

                                              tACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTT                                       >  1:4054803‑M1/1‑91 (MQ=255)

                                               aCATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                                      <  1:1564700‑M1/91‑1 (MQ=255)

                                               aCATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                                      >  1:3435415‑M1/1‑91 (MQ=255)

                                                cATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT                                     <  1:2579800‑M1/91‑1 (MQ=255)

                                                cATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT                                     <  1:1361328‑M1/91‑1 (MQ=255)

                                                 aTCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTG                                    <  1:775020‑M1/91‑1 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                   >  1:889767/1‑91 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                   >  1:4134552/1‑91 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                   <  1:2901208/91‑1 (MQ=255)

                                                  tCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTgg                                   <  1:61222/91‑1 (MQ=255)

                                                   ccTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGc                                  <  1:3014752/91‑1 (MQ=255)

                                                    cTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCt                                 <  1:282794/91‑1 (MQ=255)

                                                     ttCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCtt                                <  1:1606281/91‑1 (MQ=255)

                                                        ggaaacctagctggaatcgcagctactatGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTa                              >  1:268385‑M2/30‑91 (MQ=255)

                                                        GAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCGAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTaa                             <  1:153417‑M1/91‑1 (MQ=255)

                                                         aaaCCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGaagatgtt                            <  1:2053572‑M1/91‑9 (MQ=255)

                                                          AACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAacc                           <  1:2444516‑M1/91‑2 (MQ=255)

                                                          AACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa                           <  1:1754764‑M1/91‑1 (MQ=255)

                                                          AACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa                           <  1:1247181‑M1/91‑1 (MQ=255)

                                                           aacctagctggaatcgcagctactatGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa                           >  1:853465‑M2/27‑91 (MQ=255)

                                                            acctagctggaatcgcagctactatGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACAt                          >  1:2546790‑M2/26‑91 (MQ=255)

                                                             aaaccTAGCTG‑GAATCGCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt                        <  1:1467753‑M1/86‑1 (MQ=255)

                                                             CATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt                        >  1:1433277‑M1/1‑91 (MQ=255)

                                                             CATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt                        >  1:3470009‑M1/1‑91 (MQ=255)

                                                              aTAGTTGCTGCGATTC‑CAGCTAGGTCTCCTTTTATCCCAATTTTAGCTAATTTGTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt                       <  1:3860852/91‑1 (MQ=255)

                                                              aTAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt                       >  1:2613013/1‑91 (MQ=255)

                                                              aTAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt                       <  1:3902951/91‑1 (MQ=255)

                                                               tagtagCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCCATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTc                      <  1:3503501‑M2/91‑2 (MQ=255)

                                                               tagtagCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTc                      >  1:1678058‑M2/1‑90 (MQ=255)

                                                               tagtagCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTc                      <  1:179548‑M2/91‑2 (MQ=255)

                                                                agtagCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca                     >  1:3049475‑M2/1‑89 (MQ=255)

                                                                   AGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCaaaa                  <  1:132587‑M1/91‑1 (MQ=255)

                                                                     CTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc                >  1:1834662‑M1/1‑91 (MQ=255)

                                                                     CTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc                >  1:3358857‑M1/1‑91 (MQ=255)

                                                                     CTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc                <  1:394104‑M1/91‑1 (MQ=255)

                                                                      TGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACt               >  1:428084‑M1/1‑91 (MQ=255)

                                                                       GCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTg              <  1:46558‑M1/91‑1 (MQ=255)

                                                                        cGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAActgc             <  1:100059/91‑1 (MQ=255)

                                                                         gaatcgcagctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAActgc             >  1:224632‑M2/13‑91 (MQ=255)

                                                                           ttC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCtgt          >  1:3658699/1‑91 (MQ=255)

                                                                             c‑cAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa        <  1:1905314/91‑1 (MQ=255)

                                                                             c‑cAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa        >  1:2643190/1‑91 (MQ=255)

                                                                             c‑cAGCTAGGTTTCCTTTGATCCCAATTTTAGCGAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGa        <  1:3547824/91‑1 (MQ=255)

                                                                                agctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGAtt      <  1:931270‑M2/86‑1 (MQ=255)

                                                                                 gctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTa     >  1:50769‑M2/5‑91 (MQ=255)

                                                                                  ctaGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTAt    >  1:3244350‑M2/4‑91 (MQ=255)

                                                                                    aGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGt  >  1:2133283‑M2/2‑91 (MQ=255)

TTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTC‑CAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGCTGTGATTATGT  >  NC_012417/2077‑2250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.